Evidence map›Paper›PMID 18346943›Full record

ArticleGene expression patterns : GEP2008

Transcriptional profiling of Wnt4 mutant mouse kidneys identifies genes expressed during nephron formation.

M Todd Valerius, Andrew P McMahon

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. A holey pursuit: lumen formation in the developing kidney.Pediatric nephrology (Berlin, Germany) · 2017
    Review
  4. Renal dysplasia in the neonate.Current opinion in pediatrics · 2016
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Wnt to build a tube: contributions of Wnt signaling to epithelial tubulogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2010
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

M Todd ValeriusDepartment of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.
Andrew P McMahon
Harvard University · US

Funding

Cell Interactions in Development of the Mammalian KidneyR37DK054364 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P. · 2008 to 2017
$7.0M
CELL INTERACTIONS IN DEVELOPMENT OF THE MAMMALIAN KIDNEYR01DK054364 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MCMAHON, ANDREW P. · 1998 to 2022
$6.9M
Kidney molecular atlas projectU01DK070181 · NIDDK · HARVARD UNIVERSITY · PI MCMAHON, ANDREW P. · 2004 to 2010
$5.9M
Molecular Regulation of Nephron FormationF32DK060319 · NIDDK · HARVARD UNIVERSITY · PI VALERIUS, MICHAEL T · 2001 to 2003
$118k
NIDDK NIH HHS DK054364NIDDK NIH HHS DK070181NIDDK NIH HHS F32 DK060319NIDDK NIH HHS F32DK060319NIDDK NIH HHS R01 DK054364NIDDK NIH HHS R37 DK054364NIDDK NIH HHS U01 DK070181
6 · The paper itself

Abstract

The mature nephron forms from a simple epithelial vesicle into an elaborate structure with distinct regions of specialized physiological function. The molecular components driving the process of nephron development are not well understood. To identify genes that may be informative in this process we conducted a transcriptional profiling screen using Wnt4 mutant kidneys. In Wnt4-/- homozygous mice, condensates and pretubular aggregates are induced, however, epithelial renal vesicles fail to form and subsequent tubulogenesis is blocked. A transcriptional profile comparison between wildtype and Wnt4-/- mutant kidneys at E14.5 was performed using Affymetrix oligonucleotide microarrays to identify nephron-expressed genes. This approach identified 236 genes with expression levels >1.8-fold higher in wildtype versus mutant kidneys, amongst these were a number of known nephron component markers confirming the validity of the screen. These results were further detailed by wholemount in situ hybridization (WISH) of E15.5 urogenital systems (UGS). We annotated the spatial expression pattern of these genes into eight categories of expression. Genes expressed in renal vesicle and their derivatives, structures absent in the mutant, accounted for the largest number of the observed expression patterns. A number of additional genes in areas not directly overlapping the Wnt4 expression domain were also identified including the cap mesenchyme, the collecting duct, and the cortical interstitium. This study provides a useful compendium of molecular markers for the study of nephrogenesis.

Indexed as

Gene Expression ProfilingTranscription, GeneticAnimalsBiomarkersEmbryo, MammalianEmbryonic DevelopmentHomozygoteIn Situ HybridizationKidneyMiceMice, Inbred StrainsMice, Mutant StrainsModels, BiologicalNephronsOligonucleotide Array Sequence AnalysisWnt4 ProteinBiomarkersWnt4 ProteinWnt4 protein, mouseWnt Proteins

Identifiers

PMID18346943
PMCPMC2435058
OpenAlexW1996161308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.