Evidence map›Paper›PMID 18344337›Full record

ArticleApplied and environmental microbiology2008

Biogeographic and phylogenetic diversity of thermoacidophilic cyanidiales in Yellowstone National Park, Japan, and New Zealand.

J A Toplin, T B Norris, C R Lehr, T R McDermott, R W Castenholz

Erratum issuedAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  5. Removal of Cadmium (II) from Aqueous Solution UsingBiotech (Basel (Switzerland)) · 2024
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  8. Article
  9. Article
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  12. Cell adaptation of the extremophilic red microalgaFrontiers in plant science · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Adaptation ofMicroorganisms · 2020
    Article
  18. Prevalent pH Controls the Capacity ofPlants (Basel, Switzerland) · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors.

J A ToplinCenter for Ecology and Evolutionary Biology, 5289 University of Oregon, Eugene, Oregon 97403-5289, USA.
T B Norris
C R Lehr
T R McDermott
R W Castenholz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the rhodophytan order Cyanidiales are unique among phototrophs in their ability to live in extreme environments that combine low pH levels ( approximately 0.2 to 4.0) and moderately high temperatures of 40 to 56 degrees C. These unicellular algae occur in far-flung volcanic areas throughout the earth. Three genera (Cyanidium, Galdieria, and Cyanidioschyzon) are recognized. The phylogenetic diversity of culture isolates of the Cyanidiales from habitats throughout Yellowstone National Park (YNP), three areas in Japan, and seven regions in New Zealand was examined by using the chloroplast RuBisCO large subunit gene (rbcL) and the 18S rRNA gene. Based on the nucleotide sequences of both genes, the YNP isolates fall into two groups, one with high identity to Galdieria sulphuraria (type II) and another that is by far the most common and extensively distributed Yellowstone type (type IA). The latter is a spherical, walled cell that reproduces by internal divisions, with a subsequent release of smaller daughter cells. This type, nevertheless, shows a 99 to 100% identity to Cyanidioschyzon merolae (type IB), which lacks a wall, divides by "fission"-like cytokinesis into two daughter cells, and has less than 5% of the cell volume of type IA. The evolutionary and taxonomic ramifications of this disparity are discussed. Although the 18S rRNA and rbcL genes did not reveal diversity among the numerous isolates of type IA, chloroplast short sequence repeats did show some variation by location within YNP. In contrast, Japanese and New Zealand strains showed considerable diversity when we examined only the sequences of 18S and rbcL genes. Most exhibited identities closer to Galdieria maxima than to other strains, but these identities were commonly as low as 91 to 93%. Some of these Japanese and New Zealand strains probably represent undescribed species that diverged after long-term geographic isolation.

Indexed as

BiodiversityAlgal ProteinsCluster AnalysisDNA, AlgalDNA, RibosomalGeographyJapanMolecular Sequence DataNew ZealandPhylogenyRhodophytaRibulose-Bisphosphate CarboxylaseRNA, Ribosomal, 18SSequence Analysis, DNASequence Homology, Nucleic AcidUnited StatesAlgal ProteinsDNA, AlgalDNA, RibosomalRibulose-Bisphosphate CarboxylaseRNA, Ribosomal, 18S

Identifiers

PMID18344337
PMCPMC2394875

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.