Evidence map›Paper›PMID 18344330›Full record

ArticleApplied and environmental microbiology2008

Isolation and identification of rhizoxin analogs from Pseudomonas fluorescens Pf-5 by using a genomic mining strategy.

Joyce E Loper, Marcella D Henkels, Brenda T Shaffer, Frederick A Valeriote, Harald Gross

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 115 citations in OpenAlex.

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  16. Draft Genome Sequence ofMicrobiology resource announcements · 2020
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  17. Draft Genome Sequence of Pseudomonas chlororaphis subsp.Microbiology resource announcements · 2020
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  18. Article
  19. Genetic factors involved in rhizosphere colonization by phytobeneficialComputational and structural biotechnology journal · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Joyce E LoperHorticultural Crops Research Laboratory, Agricultural Research Service, United States Department of Agriculture, Corvallis, Oregon 97330, USA.
Marcella D Henkels
Brenda T Shaffer
Frederick A Valeriote
Harald Gross
Agricultural Research Service · USHenry Ford Health System · USHorticultural Crops Research Laboratory · USUnited States Department of Agriculture · USUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The products synthesized from a hybrid polyketide synthase/nonribosomal peptide synthetase gene cluster in the genome of Pseudomonas fluorescens Pf-5 were identified using a genomics-guided strategy involving insertional mutagenesis and subsequent metabolite profiling. Five analogs of rhizoxin, a 16-member macrolide with antifungal, phytotoxic, and antitumor activities, were produced by Pf-5, but not by a mutant with an insertion in the gene cluster. The five rhizoxin analogs, one of which had not been described previously, were differentially toxic to two agriculturally important plant pathogens, Botrytis cinerea and Phytophthora ramorum. The rhizoxin analogs also caused swelling of rice roots, a symptom characteristic of rhizoxin itself, but were less toxic to pea and cucumber roots. Of the rhizoxin analogs produced by Pf-5, the predominant compound, WF-1360 F, and the newly described compound 22Z-WF-1360 F were most toxic against the two plant pathogens and three plant species. These rhizoxin analogs were tested against a panel of human cancer lines, and they exhibited potent but nonselective cytotoxicity. This study highlights the value of the genomic sequence of the soil bacterium P. fluorescens Pf-5 in providing leads for the discovery of novel metabolites with significant biological properties.

Indexed as

Antifungal AgentsAntineoplastic AgentsBotrytisCell Line, TumorCucumisGenomicsHumansInhibitory Concentration 50MacrolidesMagnetic Resonance SpectroscopyMicrobial Sensitivity TestsMolecular StructureMultigene FamilyMutagenesis, InsertionalOryzaPeptide SynthasesAntifungal AgentsAntineoplastic AgentsMacrolidesnon-ribosomal peptide synthasePeptide SynthasesPolyketide Synthasesrhizoxin

Identifiers

PMID18344330
PMCPMC2394923
OpenAlexW2118902403

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.