Evidence map›Paper›PMID 18343985›Full record

ArticleVirus genes2008

Phylogenetic analysis of porcine circovirus type 2 (PCV2) pre- and post-epizootic postweaning multisystemic wasting syndrome (PMWS).

Sirje Timmusk, Per Wallgren, Inger Marit Brunborg, Frida Hasslung Wikström, Gordon Allan, Brian Meehan, Michael McMenamy, Francis McNeilly, Lisbeth Fuxler, Katinka Belák and 4 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Virus genes, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Sirje TimmuskDepartment of Biomedical Sciences and Veterinary Public Health, Section of Immunology, Biomedical Centre, Swedish University of Agricultural Sciences (SLU), P.O. Box 588, 751 23 Uppsala, Sweden. Sirje.Timmusk@bvf.slu.se
Per Wallgren
Inger Marit Brunborg
Frida Hasslung Wikström
Gordon Allan
Brian Meehan
Michael McMenamy
Francis McNeilly
Lisbeth Fuxler
Katinka Belák
Diivi Põdersoo
Tiiu Saar
Mikael Berg
Caroline Fossum

Funding

Molecular Determinants of Virulence Porcine Circovirus 2R21AI053120 · NIAID · OHIO STATE UNIVERSITY · PI KRAKOWKA, STEVEN · 2004 to 2004
$374k
NIAID NIH HHS R21 AI53120-01A1
6 · The paper itself

Abstract

The porcine circovirus type 2 (PCV2) genome encodes three major open reading frames (ORFs) encoding the replicase proteins (ORF1), the viral capsid protein (ORF2), and a protein with suggested apoptotic activity (ORF3). Previous phylogenetic analyses of complete genome sequences of PCV2 from GenBank have demonstrated 95-100% intra-group nucleotide sequence identity. However, although these isolates were readily grouped into clusters and clades, there was no correlation between the occurrence of specific PCV2 genotypes and the geographic origin or health status of the pig. In the present study, a unique dataset from a field study spanning the years pre and post the recognition of postweaning multisystemic wasting syndrome (PMWS) in Sweden was utilized. Using this dataset it was possible to discriminate three Swedish genogroups (SG1-3) of PCV2, of which SG1 was recovered from a pig on a healthy farm ten years before the first diagnosis of PMWS in Sweden. The SG1 PCV2/ORF2 gene sequence has been demonstrated to exhibit a high genetic stability over time and has subsequently only been demonstrated in samples from pigs on nondiseased farms. In contrast, SG2 was almost exclusively found on farms that had only recently broken down with PMWS whereas the SG3 genogroup predominated in pigs from PMWS-affected farms. These results further support the results obtained from earlier in vitro and in vivo experimental models and suggest the association of specific PCV2 genogroups with diseased and nondiseased pigs in the field.

Indexed as

PhylogenyAmino Acid SequenceAnimalsCircoviridae InfectionsEuropeFemaleGenotypeMaleMolecular Sequence DataOpen Reading FramesParvovirus, PorcinePorcine Postweaning Multisystemic Wasting SyndromeSequence AlignmentSequence AnalysisSwineViral ProteinsViral Proteins

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.