Evidence map›Paper›PMID 18343819›Full record

ArticleThe Journal of biological chemistry2008

PGC-1-related coactivator complexes with HCF-1 and NRF-2beta in mediating NRF-2(GABP)-dependent respiratory gene expression.

Kristel Vercauteren, Natalie Gleyzer, Richard C Scarpulla

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 78 citations in OpenAlex.

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  17. Mechanisms of mammalian mitochondrial transcription.Protein science : a publication of the Protein Society · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kristel VercauterenDepartment of Cell and Molecular Biology, Northwestern Medical School, Chicago, Illinois 60611, USA.
Natalie Gleyzer
Richard C Scarpulla
Northwestern University · US

Funding

TRANSCRIPTIONAL CONTROL BY NUCLEAR RESPIRATORY FACTORSR01GM032525 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SCARPULLA, RICHARD · 1985 to 2012
$4.6M
Nuclear Control of Respiratory Chain ExpressionR56GM032525 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SCARPULLA, RICHARD · 2007 to 2007
$478k
NIGMS NIH HHS GM32525-25
6 · The paper itself

Abstract

The PGC-1 family of regulated coactivators (PGC-1alpha, PGC-1beta, and PRC) plays an important role in directing respiratory gene expression in response to environmental signals. Here, we show that PRC and PGC-1alpha differ in their interactions with nuclear hormone receptors but are highly similar in their direct binding to several nuclear transcription factors implicated in the expression of the respiratory chain. Surprisingly, neither coactivator binds NRF-2(GABP), a multisubunit transcriptional activator associated with the expression of many respiratory genes. However, the NRF-2 subunits and PRC are co-immunoprecipitated from cell extracts indicating that the two proteins exist in a complex in vivo. Several lines of evidence indicate that HCF-1 (host cell factor 1), a major chromatin component, mediates the association between PRC and NRF-2. Both PRC and NRF-2beta bind HCF-1 in vitro, and the molecular determinants required for the interactions of each with HCF-1 are also required for PRC trans-activation through promoter-bound NRF-2. These determinants include a consensus HCF-1 binding site on PRC and the NRF-2 activation domain. In addition, PRC and NRF-2beta can complex with HCF-1 in vivo, and all three associate with NRF-2-dependent nuclear genes that direct the expression of the mitochondrial transcription factors, TFB1M and TFB2M. Finally, short hairpin RNA-mediated knock down of PRC protein levels leads to reduced expression of TFB2M mRNA and mitochondrial transcripts for cytochrome oxidase II (COXII) and cytochrome b. These changes in gene expression coincide with a marked reduction in cytochrome oxidase activity. The results are consistent with a pathway whereby PRC regulates NRF-2-dependent genes through a multiprotein complex involving HCF-1.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsBinding SitesCell LineChromatin ImmunoprecipitationElectron TransportElectron Transport Complex IVGA-Binding Protein Transcription FactorHost Cell Factor C1HumansHydrophobic and Hydrophilic InteractionsMiceMolecular Sequence DataPromoter Regions, GeneticProtein BindingElectron Transport Complex IVGA-Binding Protein Transcription FactorHost Cell Factor C1peroxisome-proliferator-activated receptor-gamma coactivator-1RNA, MessengerRNA, Small InterferingTranscription Factors

Identifiers

PMID18343819
PMCPMC2335357
OpenAlexW2011854550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.