Evidence map›Paper›PMID 18343477›Full record

ArticleVirology2008

Hepatitis C virus envelope glycoprotein co-evolutionary dynamics during chronic hepatitis C.

Hui Li, Brian J McMahon, Susan McArdle, Dana Bruden, Daniel G Sullivan, Dave Shelton, Heike Deubner, David R Gretch

Abstract readComparative Study
In one paragraph

Article in Virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hui LiDepartment of Laboratory Medicine, University of Washington Medical Center, Seattle, WA, USA.
Brian J McMahon
Susan McArdle
Dana Bruden
Daniel G Sullivan
Dave Shelton
Heike Deubner
David R Gretch

Funding

HOST DEFENSE TRAINING IN ALLERGY AND INFECTIOUS DISEASEST32AI007044 · NIAID · UNIVERSITY OF WASHINGTON · PI DAVID Neal FREDRICKS · 1985 to 2026
$14.6M
HCV Replication and Immune Response in HIV CoinfectionR01AI049168 · NIAID · UNIVERSITY OF WASHINGTON · PI GRETCH, DAVID RICHARD · 2001 to 2010
$4.9M
HIV replication and cell injury in cultured hepatocytesU19AI048214 · NIAID · UNIVERSITY OF WASHINGTON · PI FAUSTO, NELSON · 2000 to 2004
$3.9M
Viral Host Interactions in Hepatitis CR01AI066209 · NIAID · UNIVERSITY OF WASHINGTON · PI GRETCH, DAVID RICHARD · 2006 to 2010
$2.1M
NIAID NIH HHS AI 48214NIAID NIH HHS AI 7044-28NIAID NIH HHS R01 AI049168NIAID NIH HHS R01 AI066209NIAID NIH HHS T32 AI007044NIAID NIH HHS U19 AI048214
6 · The paper itself

Abstract

Hepatitis C virus (HCV) envelope glycoprotein co-evolution was studied in 14 genotype 1-infected and treatment-naive subjects, including 7 with mild and 7 with severe liver disease. Cassettes encoding the envelope 1 gene (E1) and hypervariable region (HVR1) of the envelope 2 gene were isolated at 38 different time points over 81 follow-up years. There were no significant differences in age, gender, alcohol use, or viral load between the mild and severe disease groups. Virus from subjects with severe disease had significantly slower evolution in HVR1, and significant divergent evolution of E1 quasispecies, characterized by a preponderance of synonymous mutations, compared to virus from subjects with mild disease. Phylogenetic comparisons indicated higher similarity between amino acid sequences of the E1 and HVR1 regions with mild disease versus severe disease (r=0.44 versus r=0.17, respectively; P=0.01). In summary, HCV envelope quasispecies co-evolution differs during mild versus severe disease.

Indexed as

Amino Acid SequenceEvolution, MolecularFemaleHepacivirusHepatitis C, ChronicHumansMolecular Sequence DataSequence AlignmentViral Envelope ProteinsE1 protein, Hepatitis C virusglycoprotein E2, Hepatitis C virusViral Envelope Proteins

Identifiers

PMID18343477
PMCPMC2488153

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.