Evidence map›Paper›PMID 18342604›Full record

ArticleMolecular cell2008

A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1.

Jacky Chi Ki Ngo, Kayla Giang, Sutapa Chakrabarti, Chen-Ting Ma, Nhat Huynh, Jonathan C Hagopian, Pieter C Dorrestein, Xiang-Dong Fu, Joseph A Adams, Gourisankar Ghosh

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 122 citations in OpenAlex.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jacky Chi Ki NgoDepartment of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Kayla Giang
Sutapa Chakrabarti
Chen-Ting Ma
Nhat Huynh
Jonathan C Hagopian
Pieter C Dorrestein
Xiang-Dong Fu
Joseph A Adams
Gourisankar Ghosh
University of California, San Diego · US

Funding

GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Role of protein phosphorylation in RNA splicingR01GM067969 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2004 to 2024
$6.4M
NIGMS NIH HHS R01 GM067969NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

The 2.9 A crystal structure of the core SRPK1:ASF/SF2 complex reveals that the N-terminal half of the basic RS domain of ASF/SF2, which is destined to be phosphorylated, is bound to an acidic docking groove of SRPK1 distal to the active site. Phosphorylation of ASF/SF2 at a single site in the C-terminal end of the RS domain generates a primed phosphoserine that binds to a basic site in the kinase. Biochemical experiments support a directional sliding of the RS peptide through the docking groove to the active site during phosphorylation, which ends with the unfolding of a beta strand of the RRM domain and binding of the unfolded region to the docking groove. We further suggest that the priming of the first serine facilitates directional substrate translocation and efficient phosphorylation.

Indexed as

Protein Structure, TertiaryAdenylyl ImidodiphosphateAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayHumansMiceModels, MolecularMolecular Sequence DataMultiprotein ComplexesNuclear ProteinsPhosphorylationProtein BindingProtein Serine-Threonine KinasesRibonucleoside Diphosphate ReductaseAdenylyl ImidodiphosphateMultiprotein ComplexesNuclear ProteinsProtein Serine-Threonine KinasesRibonucleoside Diphosphate Reductaseribonucleotide reductase M2RNA-Binding ProteinsSerine-Arginine Splicing FactorsSRPK1 protein, human

Identifiers

PMID18342604
PMCPMC2852395
OpenAlexW2164896756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.