Evidence map›Paper›PMID 18340401›Full record

ArticleExtremophiles : life under extreme conditions2008

Characterization of a thermostable dihydrodipicolinate synthase from Thermoanaerobacter tengcongensis.

Suzanne Wolterink-van Loo, Mark Levisson, Maud C Cabrières, Maurice C R Franssen, John van der Oost

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In one paragraph

Article in Extremophiles : life under extreme conditions, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

  1. ColorimetricHeliyon · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Suzanne Wolterink-van LooLaboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands.
Mark Levisson
Maud C Cabrières
Maurice C R Franssen
John van der Oost
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dihydrodipicolinate synthase (DHDPS) catalyses the first reaction of the (S)-lysine biosynthesis pathway in bacteria and plants. The hypothetical gene for dihydrodipicolinate synthase (dapA) of Thermoanaerobacter tengcongensis was found in a cluster containing several genes of the diaminopimelate lysine-synthesis pathway. The dapA gene was cloned in Escherichia coli, DHDPS was subsequently produced and purified to homogeneity. The T. tengcongensis DHDPS was found to be thermostable (T0.5=3 h at 90 degrees C). The specific condensation of pyruvate and (S)-aspartate-beta -semialdehyde was catalyzed optimally at 80 degrees C at pH 8.0. Enzyme kinetics were determined at 60 degrees C, as close as possible to in vivo conditions. The established kinetic parameters were in the same range as for example E. coli dihydrodipicolinate synthase. The specific activity of the T. tengcongensis DHDPS was relatively high even at 30 degrees C. Like most dihydrodipicolinate synthases known at present, the DHDPS of T. tengcongensis seems to be a tetramer. A structural model reveals that the active site is well conserved. The binding site of the allosteric inhibitor lysine appears not to be conserved, which agrees with the fact that the DHDPS of T. tengcongensis is not inhibited by lysine under physiological conditions.

Indexed as

Allosteric RegulationAmino Acid SequenceAspartic AcidBacterial ProteinsBinding SitesCloning, MolecularEnzyme StabilityGenome, BacterialHydrogen-Ion ConcentrationHydro-LyasesKineticsLysineModels, MolecularMolecular Sequence DataProtein BindingProtein Conformation4-hydroxy-tetrahydrodipicolinate synthaseAspartic Acidaspartic semialdehydeBacterial ProteinsHydro-LyasesLysinePyruvic AcidRecombinant Proteins

Identifiers

PMID18340401
OpenAlexW2132744075

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.