Evidence map›Paper›PMID 18339812›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes.

Ludivine Sinzelle, Vladimir V Kapitonov, Dawid P Grzela, Tobias Jursch, Jerzy Jurka, Zsuzsanna Izsvák, Zoltán Ivics

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Evolutionary innovation through fusion of sequences from across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  13. Diversity ofAnimals : an open access journal from MDPI · 2022
    Article
  14. Schizophrenia-Linked Protein tSNARE1 Regulates Endosomal Trafficking in Cortical Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
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  16. Review
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  19. Review
  20. Frontiers in cell and developmental biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Ludivine SinzelleMax Delbrück Center for Molecular Medicine, 13092 Berlin, Germany.
Vladimir V Kapitonov
Dawid P Grzela
Tobias Jursch
Jerzy Jurka
Zsuzsanna Izsvák
Zoltán Ivics
Max Delbrück Center · DEGenetic Information Research Institute · USHUN-REN Szegedi Biológiai Kutatóközpont · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ancient, inactive copies of transposable elements of the PIF/Harbinger superfamily have been described in vertebrates. We reconstructed components of the Harbinger3_DR transposon in zebrafish, including a transposase and a second, transposon-encoded protein that has a Myb-like trihelix domain. The reconstructed Harbinger transposon shows efficient cut-and-paste transposition in human cells and preferentially inserts into a 15-bp consensus target sequence. The Myb-like protein is required for transposition and physically interacts with the N-terminal region of the transposase via its C-terminal domain. The Myb-like protein enables transposition in part by promoting nuclear import of the transposase, by directly binding to subterminal regions of the transposon, and by recruiting the transposase to the transposon ends. We investigated the functions of two transposon-derived human proteins: HARBI1, a domesticated transposase-derived protein, and NAIF1, which contains a trihelix motif similar to that described in the Myb-like protein. Physical interaction, subcellular localization, and DNA-binding activities of HARBI1 and NAIF1 suggest strong functional homologies between the Harbinger3_DR system and their related, host-encoded counterparts. The Harbinger transposon will serve as a useful experimental system for transposon biology and for investigating the enzymatic functions of domesticated, transposon-derived cellular genes.

Indexed as

Sequence Homology, Amino AcidActive Transport, Cell NucleusAmino Acid SequenceAnimalsApoptosis Regulatory ProteinsBase PairingBase SequenceCell NucleusConsensus SequenceDNA Transposable ElementsHeLa CellsHumansMolecular Sequence DataMutagenesis, InsertionalNuclear ProteinsProtein BindingApoptosis Regulatory ProteinsDNA Transposable ElementsHARBI1 protein, humanNAIF1 protein, humanNuclear ProteinsProto-Oncogene Proteins c-mybTransposases

Identifiers

PMID18339812
PMCPMC2290759
OpenAlexW2156020179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.