Evidence map›Paper›PMID 18338186›Full record

ArticleInvertebrate neuroscience : IN2008

Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.

Makoto Ihara, Toshihide Okajima, Atsuko Yamashita, Takuma Oda, Koichi Hirata, Hisashi Nishiwaki, Takako Morimoto, Miki Akamatsu, Yuji Ashikawa, Shun'ichi Kuroda and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Invertebrate neuroscience : IN, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
18.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 157 citations in OpenAlex.

  1. Article
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  5. Efficient Expression inMolecules (Basel, Switzerland) · 2024
    Article
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  7. Review
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  14. Investigations on the E/Z-isomerism of neonicotinoids.Journal of computer-aided molecular design · 2021
    Article
  15. Exploiting the Freshwater ShrimpAntioxidants (Basel, Switzerland) · 2021
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Makoto IharaRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.
Toshihide Okajima
Atsuko Yamashita
Takuma Oda
Koichi Hirata
Hisashi Nishiwaki
Takako Morimoto
Miki Akamatsu
Yuji Ashikawa
Shun'ichi Kuroda
Ryosuke Mega
Seiki Kuramitsu
David B Sattelle
Kazuhiko Matsuda
Kindai University · JPOsaka University · JPSPring-8 · JPKyoto University · JPKyoto University of Education · JPUniversity of Oxford · GB

Funding

Medical Research Council
6 · The paper itself

Abstract

Neonicotinoid insecticides, which act on nicotinic acetylcholine receptors (nAChRs) in a variety of ways, have extremely low mammalian toxicity, yet the molecular basis of such actions is poorly understood. To elucidate the molecular basis for nAChR-neonicotinoid interactions, a surrogate protein, acetylcholine binding protein from Lymnaea stagnalis (Ls-AChBP) was crystallized in complex with neonicotinoid insecticides imidacloprid (IMI) or clothianidin (CTD). The crystal structures suggested that the guanidine moiety of IMI and CTD stacks with Tyr185, while the nitro group of IMI but not of CTD makes a hydrogen bond with Gln55. IMI showed higher binding affinity for Ls-AChBP than that of CTD, consistent with weaker CH-pi interactions in the Ls-AChBP-CTD complex than in the Ls-AChBP-IMI complex and the lack of the nitro group-Gln55 hydrogen bond in CTD. Yet, the NH at position 1 of CTD makes a hydrogen bond with the backbone carbonyl of Trp143, offering an explanation for the diverse actions of neonicotinoids on nAChRs.

Indexed as

Models, MolecularAnimalsBinding SitesGuanidinesImidazolesLymnaeaMolecular ConformationMolecular Sequence DataNeonicotinoidsNitro CompoundsReceptors, NicotinicStructure-Activity RelationshipThiazolesclothianidinGuanidinesimidaclopridImidazolesNeonicotinoidsNitro CompoundsReceptors, NicotinicThiazoles

Identifiers

PMID18338186
PMCPMC2413115
OpenAlexW1995716106

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.