ArticlePlant physiology2008
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae.
Article in Plant physiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 130 papers.
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Who cites it
130 citing papers in PubMed, 283 citations in OpenAlex.
- MdWRKY61 enhances apple resistance to Colletotrichum fructicola through jasmonic acid signaling pathway.Plant cell reports · 2026Article
- Identification, evolution, and expression analysis of the PEBP gene family in tobacco (Nicotiana tabacum) and its role in flowering regulation via interaction with 14-3-3 proteins.BMC plant biology · 2026Article
- Screening and functional characterization of salt-tolerant NAC gene family members inFrontiers in plant science · 2025Article
- Genome-wide investigation and expression analysis of sweet cherryFrontiers in plant science · 2025Article
- Global analysis of transcription factors using both the reference genome and the multi-transcriptome ofFrontiers in plant science · 2025Article
- Research progress of NAC transcription factors in woody plants.Frontiers in plant science · 2025Review
- Identification ofPlants (Basel, Switzerland) · 2024Article
- Capsicum annuum NAC4 (CaNAC4) Is a Transcription Factor with Roles in Biotic and Abiotic Stresses.The plant pathology journal · 2024Article
- A novel AP2/ERF transcription factor, NtERF10, positively regulates plant height in tobacco.Transgenic research · 2024Article
- Overexpression ofPlants (Basel, Switzerland) · 2024Article
- Genome-Wide Identification of the WRKY Gene Family in Four Cotton Varieties and the Positive Role ofPlants (Basel, Switzerland) · 2024Article
- Transcriptional Control of Seed Life: New Insights into the Role of the NAC Family.International journal of molecular sciences · 2024Review
- Pangenome characterization and analysis of the NAC gene family reveals genes for Sclerotinia sclerotiorum resistance in sunflower (Helianthus annuus).BMC genomic data · 2024Article
- TaWRKY31, a novel WRKY transcription factor in wheat, participates in regulation of plant drought stress tolerance.BMC plant biology · 2024Article
- Gene expression analysis of potato drought-responsive genes under drought stress in potato (PeerJ · 2024Article
- Comparative transcriptome analysis reveals nicotine metabolism is a critical component for enhancing stress response intensity of innate immunity system in tobacco.Frontiers in plant science · 2024Article
- Gene Cloning and Characterization of Transcription FactorInternational journal of molecular sciences · 2023Article
- The Transcription FactorInternational journal of molecular sciences · 2023Article
- Advances in the Biosynthesis of Terpenoids and Their Ecological Functions in Plant Resistance.International journal of molecular sciences · 2023Review
- Structural basis of DNA binding by the NAC transcription factor ORE1, a master regulator of plant senescence.Plant communications · 2023Article
70 more citing papers are in PubMed but not listed here.
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tobacco (Nicotiana tabacum) is a member of the Solanaceae, one of the agronomically most important groups of flowering plants. We have performed an in silico analysis of 1.15 million gene-space sequence reads from the tobacco nuclear genome and report the detailed analysis of more than 2,500 tobacco transcription factors (TFs). The tobacco genome contains at least one member of each of the 64 well-characterized TF families identified in sequenced vascular plant genomes, indicating that evolution of the Solanaceae was not associated with the gain or loss of TF families. However, we found notable differences between tobacco and non-Solanaceae species in TF family size and evidence for both tobacco- and Solanaceae-specific subfamily expansions. Compared with TF families from sequenced plant genomes, tobacco has a higher proportion of ERF/AP2, C2H2 zinc finger, homeodomain, GRF, TCP, zinc finger homeodomain, BES, and STERILE APETALA (SAP) genes and novel subfamilies of BES, C2H2 zinc finger, SAP, and NAC genes. The novel NAC subfamily, termed TNACS, appears restricted to the Solanaceae, as they are absent from currently sequenced plant genomes but present in tomato (Solanum lycopersicum), pepper (Capsicum annuum), and potato (Solanum tuberosum). They constitute approximately 25% of NAC genes in tobacco. Based on our phylogenetic studies, we predict that many of the more than 50 tobacco group IX ERF genes are involved in jasmonate responses. Consistent with this, over two-thirds of group IX ERF genes tested showed increased mRNA levels following jasmonate treatment. Our data are a major resource for the Solanaceae and fill a void in studies of TF families across the plant kingdom.
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