ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2008
Sequence level analysis of recently duplicated regions in soybean [Glycine max (L.) Merr.] genome.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed.
- Chromosome-scale reference genome of an ancient landrace: unveiling the genetic basis of seed weight in the food legume crop pigeonpea (Horticulture research · 2024Article
- Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives.Biotechnology for biofuels and bioproducts · 2024Article
- Genome-wide identification of BBX gene family and their expression patterns under salt stress in soybean.BMC genomics · 2022Article
- Integrated multi-omics analysis provides insights into genome evolution and phosphorus deficiency adaptation in pigeonpea (Horticulture research · 2022Article
- Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae.Genome biology and evolution · 2015Article
- Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumes.PloS one · 2014Article
- High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.Genome announcements · 2013Article
- Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max).BMC genomics · 2013Article
- Gene divergence of homeologous regions associated with a major seed protein content QTL in soybean.Frontiers in plant science · 2013Article
- Tracing soybean domestication history: From nucleotide to genome.Breeding science · 2012Article
- Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication.Molecular genetics and genomics : MGG · 2011Article
- Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.The Plant cell · 2010Article
- Comparison of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species.BMC plant biology · 2010Article
- Fine mapping of a resistance gene to bacterial leaf pustule in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Dynamic rearrangements determine genome organization and useful traits in soybean.Plant physiology · 2009Article
- The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.BMC plant biology · 2008Article
- Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.Plant physiology · 2008Article
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10 authors.
Funding
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Abstract
A single recessive gene, rxp, on linkage group (LG) D2 controls bacterial leaf-pustule resistance in soybean. We identified two homoeologous contigs (GmA and GmA') composed of five bacterial artificial chromosomes (BACs) during the selection of BAC clones around Rxp region. With the recombinant inbred line population from the cross of Pureunkong and Jinpumkong 2, single-nucleotide polymorphism and simple sequence repeat marker genotyping were able to locate GmA' on LG A1. On the basis of information in the Soybean Breeders Toolbox and our results, parts of LG A1 and LG D2 share duplicated regions. Alignment and annotation revealed that many homoeologous regions contained kinases and proteins related to signal transduction pathway. Interestingly, inserted sequences from GmA and GmA' had homology with transposase and integrase. Estimation of evolutionary events revealed that speciation of soybean from Medicago and the recent divergence of two soybean homoeologous regions occurred at 60 and 12 million years ago, respectively. Distribution of synonymous substitution patterns, K(s), yielded a first secondary peak (mode K(s) = 0.10-0.15) followed by two smaller bulges were displayed between soybean homologous regions. Thus, diploidized paleopolyploidy of soybean genome was again supported by our study.
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