Evidence map›Paper›PMID 18332430›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks.

Shannon D Manning, Alifiya S Motiwala, A Cody Springman, Weihong Qi, David W Lacher, Lindsey M Ouellette, Janice M Mladonicky, Patricia Somsel, James T Rudrik, Stephen E Dietrich and 4 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 229 papers.

0numbers the graph read from it
0cells of the map it votes in
229citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

229 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Shiga Toxin-ProducingMicroorganisms · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Comparative analyses of persistence traits inFrontiers in microbiology · 2024
    Article
  14. Article
  15. The diverse landscape of AB5-type toxins.Engineering microbiology · 2023
    Review
  16. Genome-wide association study of hemolytic uremic syndrome causing Shiga toxin-producing Escherichia coli from Sweden, 1994-2018.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2023
    Article
  17. Article
  18. Article
  19. A quantitative prevalence ofFood science & nutrition · 2023
    Article
  20. Frontiers in microbiology · 2023
    Article

169 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Shannon D ManningMicrobial Evolution Laboratory, National Food Safety and Toxicology Center, Michigan State University, East Lansing, MI 48824, USA.
Alifiya S Motiwala
A Cody Springman
Weihong Qi
David W Lacher
Lindsey M Ouellette
Janice M Mladonicky
Patricia Somsel
James T Rudrik
Stephen E Dietrich
Wei Zhang
Bala Swaminathan
David Alland
Thomas S Whittam

Funding

NIAID NIH HHS AI049353NIAID NIH HHS N01 AI030058NIAID NIH HHS N01-AI-30058
6 · The paper itself

Abstract

Escherichia coli O157:H7, a toxin-producing food and waterborne bacterial pathogen, has been linked to large outbreaks of gastrointestinal illness for more than two decades. E. coli O157 causes a wide range of clinical illness that varies by outbreak, although factors that contribute to variation in disease severity are poorly understood. Several recent outbreaks involving O157 contamination of fresh produce (e.g., spinach) were associated with more severe disease, as defined by higher hemolytic uremic syndrome and hospitalization frequencies, suggesting that increased virulence has evolved. To test this hypothesis, we developed a system that detects SNPs in 96 loci and applied it to >500 E. coli O157 clinical strains. Phylogenetic analyses identified 39 SNP genotypes that differ at 20% of SNP loci and are separated into nine distinct clades. Differences were observed between clades in the frequency and distribution of Shiga toxin genes and in the type of clinical disease reported. Patients with hemolytic uremic syndrome were significantly more likely to be infected with clade 8 strains, which have increased in frequency over the past 5 years. Genome sequencing of a spinach outbreak strain, a member of clade 8, also revealed substantial genomic differences. These findings suggest that an emergent subpopulation of the clade 8 lineage has acquired critical factors that contribute to more severe disease. The ability to detect and rapidly genotype O157 strains belonging to such lineages is important and will have a significant impact on both disease diagnosis and treatment guidelines.

Indexed as

Disease OutbreaksPhylogenyAlgorithmsConfidence IntervalsEscherichia coli O157Genetic VariationGenome, BacterialGenotypeHemolytic-Uremic SyndromeHospitalizationHumansOdds RatioPolymorphism, Single NucleotideSequence Analysis, DNAShiga ToxinSpinacia oleraceaShiga Toxin

Identifiers

PMID18332430
PMCPMC2290780

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.