Evidence map›Paper›PMID 18332421›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells.

Marios Giannakis, Swaine L Chen, Sherif M Karam, Lars Engstrand, Jeffrey I Gordon

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 111 citations in OpenAlex.

  1. Review
  2. Review
  3. Revisiting X-linked agammaglobulinemia.Journal of human immunity · 2025
    Review
  4. Article
  5. Risk prediction model for gastric cancer within 5 years in healthy Korean adults.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2024
    Article
  6. Clinical significance of CD166 and HER-2 in different types of gastric cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Rejuvenation ofFrontiers in pharmacology · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Helicobacter pylori infection and type 1 diabetes mellitus in children.Journal of diabetes and metabolic disorders · 2020
    Article
  18. Article
  19. Integrative and Conjugative Elements ofFrontiers in cellular and infection microbiology · 2020
    Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Marios GiannakisCenter for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.
Swaine L Chen
Sherif M Karam
Lars Engstrand
Jeffrey I Gordon
Washington University in St. Louis · USKarolinska Institutet · SEUnited Arab Emirates University · AE

Funding

NATIONAL RESEARCH SERVICE AWARD-MEDICAL SCIENTISTT32GM007200 · NIGMS · WASHINGTON UNIVERSITY · PI YOKOYAMA, WAYNE M. · 1985 to 2024
$59.8M
Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
pan-Genome of E.coli in the bladder and gut of women with recurrent UTIP50DK064540 · NIDDK · WASHINGTON UNIVERSITY · PI HULTGREN, SCOTT J. · 2002 to 2017
$17.9M
Gastric and intestinal epithelial progenitor cell GAPU01DK063483 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY IVAN · 2002 to 2004
$4.1M
GNOTOBIOTIC TRANSGENIC MODELS OF THE GASTRIC ECOSYSTEMR01DK058529 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 2001 to 2010
$3.5M
Computational tests of urinary tract infection mechanismF32AI068362 · NIAID · WASHINGTON UNIVERSITY · PI CHEN, SWAINE L · 2006 to 2007
$102k
NIAID NIH HHS AI068362NIAID NIH HHS F32 AI068362NIDDK NIH HHS DK52574NIDDK NIH HHS DK58529NIDDK NIH HHS DK63483NIDDK NIH HHS DK64540NIDDK NIH HHS P30 DK052574NIDDK NIH HHS P50 DK064540NIDDK NIH HHS R01 DK058529NIDDK NIH HHS U01 DK063483NIGMS NIH HHS GM07200NIGMS NIH HHS T32 GM007200
6 · The paper itself

Abstract

We have characterized the adaptations of Helicobacter pylori to a rarely captured event in the evolution of its impact on host biology-the transition from chronic atrophic gastritis (ChAG) to gastric adenocarcinoma-and defined the impact of these adaptations on an intriguing but poorly characterized interaction between this bacterium and gastric epithelial stem cells. Bacterial isolates were obtained from a single human host colonized with a single dominant strain before and after his progression from ChAG to gastric adenocarcinoma during a 4-year interval. Draft genome assemblies were generated from two isolates, one ChAG-associated, the other cancer-associated. The cancer-associated strain was less fit in a gnotobiotic transgenic mouse model of human ChAG and better able to establish itself within a mouse gastric epithelial progenitor-derived cell line (mGEP) that supports bacterial attachment. GeneChip-based comparisons of the transcriptomes of mGEPs and a control mouse gastric epithelial cell line revealed that, upon infection, the cancer-associated strain regulates expression of GEP-associated signaling and metabolic pathways, and tumor suppressor genes associated with development of gastric cancer in humans, in a manner distinct from the ChAG-associated isolate. The effects on GEP metabolic pathways, some of which were confirmed in gnotobiotic mice, together with observed changes in the bacterial transcriptome are predicted to support aspects of an endosymbiosis between this microbe and gastric stem cells. These results provide insights about how H. pylori may adapt to and influence stem cell biology and how its intracellular residency could contribute to gastric tumorigenesis.

Indexed as

Biological EvolutionStem CellsAnimalsCell SeparationChronic DiseaseDisease ProgressionEndoscopyGastritis, AtrophicGene Expression ProfilingGenome, BacterialHelicobacter pyloriHumansMiceMolecular Sequence DataPhenotypeStomach Neoplasms

Identifiers

PMID18332421
PMCPMC2393758
OpenAlexW2056103236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.