Evidence map›Paper›PMID 18330965›Full record

ArticleInorganic chemistry2008

Where water is oxidized to dioxygen: structure of the photosynthetic Mn4Ca cluster from X-ray spectroscopy.

Junko Yano, Vittal K Yachandra

Open access · greenAbstract read
In one paragraph

Article in Inorganic chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 142 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Theoretical study of the EPR spectrum of the SPhotosynthesis research · 2016
    Article
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  6. Review
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  9. Review
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  12. Kinetic modeling of the X-ray-induced damage to a metalloprotein.The journal of physical chemistry. B · 2013
    Article
  13. Article
  14. Article
  15. Article
  16. From natural to artificial photosynthesis.Journal of the Royal Society, Interface · 2013
    Article
  17. Article
  18. Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  19. Synthetic model of the asymmetric [Mn3CaO4] cubane core of the oxygen-evolving complex of photosystem II.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  20. Amorphous manganese-calcium oxides as a possible evolutionary origin for the CaMn₄ cluster in photosystem II.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Junko YanoPhysical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA. jyano@lbl.gov
Vittal K Yachandra
Lawrence Berkeley National Laboratory · US

Funding

Taking Snapshots of the Water-Oxidation Reaction by the Mn4Ca Oxygen-Evolving Complex Using X-ray Crystallography and SpectroscopyR01GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 1997 to 2022
$9.1M
Structure and Function of the Mn Oxygen-Evolving ComplexR56GM055302 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI YACHANDRA, VITTAL · 2009 to 2009
$530k
NIGMS NIH HHS GM 55302NIGMS NIH HHS R01 GM055302NIGMS NIH HHS R56 GM055302
6 · The paper itself

Abstract

Light-driven oxidation of water to dioxygen in plants, algae, and cyanobacteria is catalyzed within photosystem II (PS II) by a Mn 4Ca cluster. Although the cluster has been studied by many different methods, its structure and mechanism have remained elusive. X-ray absorption and emission spectroscopy and extended X-ray absorption fine structure studies have been particularly useful in probing the electronic and geometric structures and the mechanism of the water oxidation reaction. Recent progress, reviewed here, includes polarized X-ray absorption spectroscopy measurements of PS II single crystals. Analysis of those results has constrained the Mn 4Ca cluster geometry to a set of three similar high-resolution structures. The structure of the cluster from the present study is unlike either the 3.0- or 3.5-A-resolution X-ray structures or other previously proposed models. The differences between the models derived from X-ray spectroscopy and crystallography are predominantly because of damage to the Mn 4Ca cluster by X-rays under conditions used for the structure determination by X-ray crystallography. X-ray spectroscopy studies are also used for studying the changes in the structure of the Mn 4Ca catalytic center as it cycles through the five intermediate states known as the S i states ( i = 0-4). The electronic structure of the Mn 4Ca cluster has been studied more recently using resonant inelastic X-ray scattering spectroscopy (RIXS), in addition to the earlier X-ray absorption and emission spectroscopy methods. These studies are revealing that the assignment of formal oxidation states is overly simplistic. A more accurate description should consider the charge density on the Mn atoms, which includes the covalency of the bonds and delocalization of the charge over the cluster. The geometric and electronic structures of the Mn 4Ca cluster in the S states derived from X-ray spectroscopy are leading to a detailed understanding of the mechanism of O-O bond formation during the photosynthetic water-splitting process.

Indexed as

PhotosynthesisCalciumCrystallography, X-RayManganeseMetalloproteinsOxidation-ReductionOxygenPhotonsPlantsSpectrometry, X-Ray EmissionSpectroscopy, Fourier Transform InfraredWaterCalciumManganeseMetalloproteinsOxygenWater

Identifiers

PMID18330965
PMCPMC3947645
OpenAlexW2087156969

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.