Evidence map›Paper›PMID 18327644›Full record

ArticlePlant molecular biology2008

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize.

Natalie Jameson, Nikolaos Georgelis, Eric Fouladbash, Sara Martens, L Curtis Hannah, Shailesh Lal

Abstract read
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In one paragraph

Article in Plant molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  6. Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [COMetabolomics : Official journal of the Metabolomic Society · 2019
    Article
  7. Article
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  11. Article
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  14. The polychromatic Helitron landscape of the maize genome.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  15. Distribution, diversity, evolution, and survival of Helitrons in the maize genome.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Natalie JamesonDepartment of Biological Sciences, Oakland University, Rochester, MI 48309-4401, USA.
Nikolaos Georgelis
Eric Fouladbash
Sara Martens
L Curtis Hannah
Shailesh Lal

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mass movement of gene sequences by Helitrons has significantly contributed to the lack of gene collinearity reported between different maize inbred lines. However, Helitron captured-genes reported to date represent truncated versions of their progenitor genes. In this report, we provide evidence that maize CYP72A27-Zm gene represents a cytochrome P450 monooxygenase (P450) gene recently captured by a Helitron and transposed into an Opie-2 retroposon. The four exons of the CYP72A27 gene contained within the element contain a putative open reading frame (ORF) for 428 amino acid residues. We provide evidence that Helitron captured CYP72A27-Zm is transcribed. To identify the progenitor gene and the evolutionary time of capture, we searched the plant genome database and discovered other closely related CYP72A27-Zm genes in maize and grasses. Our analysis indicates that CYP72A27-Zm represents an almost complete copy of maize CYP72A26-Zm gene captured by a Helitron about 3.1 million years ago (mya). The Helitron-captured gene then duplicated twice, approximately 1.5-1.6 mya giving rise to CYP72A36-Zm and CYP72A37-Zm. These data provide evidence that Helitrons can capture and mobilize intact genes that are transcribed and potentially encode biologically relevant proteins.

Indexed as

Gene AmplificationAmino Acid SequenceBase PairingBase SequenceConserved SequenceCytochrome P-450 Enzyme SystemExonsMolecular Sequence DataPhylogenyPlant ProteinsReverse Transcriptase Polymerase Chain ReactionSequence AlignmentZea maysCytochrome P-450 Enzyme SystemPlant Proteins

Identifiers

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.