Evidence map›Paper›PMID 18321387›Full record

ArticleVirology journal2008

Vaccinia virus lacking the deoxyuridine triphosphatase gene (F2L) replicates well in vitro and in vivo, but is hypersensitive to the antiviral drug (N)-methanocarbathymidine.

Mark N Prichard, Earl R Kern, Debra C Quenelle, Kathy A Keith, Richard W Moyer, Peter C Turner

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mark N PrichardDepartment of Pediatrics, University of Alabama School of Medicine, Birmingham, AL 35233, USA. mprichard@peds.uab.edu
Earl R Kern
Debra C Quenelle
Kathy A Keith
Richard W Moyer
Peter C Turner
University of Alabama · USUniversity of Florida · US

Funding

Yessinia autotransporters (Yaps): Structure, function, and host responseU54AI057157 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FROTHINGHAM, RICHARD · 2003 to 2013
$91.4M
Poxvirus proteins involved in virion binding, membrane fusion, & entry into cellsR56AI015722 · NIAID · UNIVERSITY OF FLORIDA · PI MOYER, RICHARD W · 2007 to 2007
$293k
NIAID NIH HHS 2R56AI015722-25NIAID NIH HHS I-U54-AI-057157NIAID NIH HHS N01 AI015439NIAID NIH HHS N01 AI030049NIAID NIH HHS N01-AI-15439NIAID NIH HHS N01-AI-30049NIAID NIH HHS R56 AI015722NIAID NIH HHS U54 AI057157
6 · The paper itself

Abstract

backgroundThe vaccinia virus (VV) F2L gene encodes a functional deoxyuridine triphosphatase (dUTPase) that catalyzes the conversion of dUTP to dUMP and is thought to minimize the incorporation of deoxyuridine residues into the viral genome. Previous studies with with a complex, multigene deletion in this virus suggested that the gene was not required for viral replication, but the impact of deleting this gene alone has not been determined in vitro or in vivo. Although the crystal structure for this enzyme has been determined, its potential as a target for antiviral therapy is unclear.

resultsThe F2L gene was replaced with GFP in the WR strain of VV to assess its effect on viral replication. The resulting virus replicated well in cell culture and its replication kinetics were almost indistinguishable from those of the wt virus and attained similar titers. The virus also appeared to be as pathogenic as the WR strain suggesting that it also replicated well in mice. Cells infected with the dUTPase mutant would be predicted to affect pyrimidine deoxynucleotide pools and might be expected to exhibit altered susceptibility to pyrimidine analogs. The antiviral activity of cidofovir and four thymidine analogs were evaluated both in the mutant and the parent strain of this virus. The dUTPase knockout remained fully susceptible to cidofovir and idoxuridine, but was hypersensitive to the drug (N)-methanocarbathymidine, suggesting that pyrimidine metabolism was altered in cells infected with the mutant virus. The absence of dUTPase should reduce cellular dUMP pools and may result in a reduced conversion to dTMP by thymidylate synthetase or an increased reliance on the salvage of thymidine by the viral thymidine kinase.

conclusionWe confirmed that F2L was not required for replication in cell culture and determined that it does not play a significant role on virulence of the virus in intranasally infected mice. The recombinant virus is hypersensitive to (N)-methanocarbathymidine and may reflect metabolic differences in the mutant virus.

Indexed as

AnimalsAntiviral AgentsFemaleGreen Fluorescent ProteinsHumansMiceMice, Inbred BALB CPyrimidinesPyrophosphatasesRecombinant Fusion ProteinsSequence DeletionThymidineVacciniaVaccinia virusViral Plaque AssayVirulenceAntiviral AgentsdUTP pyrophosphataseGreen Fluorescent Proteins(north)-methanocarbathymidinepyrimidinePyrimidinesPyrophosphatasesRecombinant Fusion ProteinsThymidine

Identifiers

PMID18321387
PMCPMC2276199
OpenAlexW2002402277

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.