Evidence map›Paper›PMID 18320253›Full record

ArticleTheory in biosciences = Theorie in den Biowissenschaften2008

"Genes".

Sonja J Prohaska, Peter F Stadler

Abstract read
In one paragraph

Article in Theory in biosciences = Theorie in den Biowissenschaften, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. The relativity of biological function.Theory in biosciences = Theorie in den Biowissenschaften · 2015
    Article
  2. Cultural traits as units of analysis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2010
    Article
  3. Defining genes: a computational framework.Theory in biosciences = Theorie in den Biowissenschaften · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sonja J ProhaskaSanta Fe Institute, 1399 Hyde Park Rd., Santa Fe, NM, 87501, USA. sonja@santafe.edu
Peter F Stadler

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to describe a cell at molecular level, a notion of a "gene" is neither necessary nor helpful. It is sufficient to consider the molecules (i.e., chromosomes, transcripts, proteins) and their interactions to describe cellular processes. The downside of the resulting high resolution is that it becomes very tedious to address features on the organismal and phenotypic levels with a language based on molecular terms. Looking for the missing link between biological disciplines dealing with different levels of biological organization, we suggest to return to the original intent behind the term "gene". To this end, we propose to investigate whether a useful notion of "gene" can be constructed based on an underlying notion of function, and whether this can serve as the necessary link and embed the various distinct gene concepts of biological (sub)disciplines in a coherent theoretical framework. In reply to the Genon Theory recently put forward by Klaus Scherrer and Jürgen Jost in this journal, we shall discuss a general approach to assess a gene definition that should then be tested for its expressiveness and potential cross-disciplinary relevance.

Indexed as

Gene Expression RegulationGenesModels, GeneticAlgorithmsAnimalsComputational BiologyDNAGene Expression ProfilingHumansModels, BiologicalModels, TheoreticalPhenotypeDNA

Identifiers

PMID18320253
PMCPMC2680480

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.