Evidence map›Paper›PMID 18320023›Full record

ArticlePloS one2008

Integration of gene dosage and gene expression in non-small cell lung cancer, identification of HSP90 as potential target.

Mariëlle I Gallegos Ruiz, Karijn Floor, Paul Roepman, José A Rodriguez, Gerrit A Meijer, Wolter J Mooi, Ewa Jassem, Jacek Niklinski, Thomas Muley, Nico van Zandwijk and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 119 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Deciphering the Anticancer Arsenal ofInternational journal of medical sciences · 2024
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  6. The Prediction of Antioxidant Q-Markers forMolecules (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Diagnostic value of HSP90α and related markers in lung cancer.Journal of clinical laboratory analysis · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Predictive Study of the Active Ingredients and Potential Targets ofEvidence-based complementary and alternative medicine : eCAM · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 4 countries.

Mariëlle I Gallegos RuizDepartment of Medical Oncology, Vrije Universiteit Medisch Centrum, Amsterdam, The Netherlands.
Karijn Floor
Paul Roepman
José A Rodriguez
Gerrit A Meijer
Wolter J Mooi
Ewa Jassem
Jacek Niklinski
Thomas Muley
Nico van Zandwijk
Egbert F Smit
Kristin Beebe
Len Neckers
Bauke Ylstra
Giuseppe Giaccone
Vrije Universiteit Amsterdam · NLCenter for Cancer Research · USAgendia (Netherlands) · NLHeidelberg University · DEThe Netherlands Cancer Institute · NLUniversity of Białystok · PLUniversity of Gdańsk · PL

Funding

Role of HSP90 Family Chaperone Proteins in Cellular Signal TransductionZIASC010074 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI NECKERS, LEONARD · 2009 to 2025
$13.3M
Post-translational modifications of Hsp90 that impact drug efficacyZIABC011032 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NECKERS, LEONARD · 2009 to 2025
$11.5M
ROLE OF HSP90/GFP94 CHAPERONE PROTEINS IN CELLULAR SIGNAL TRANSDUCTIONZ01SC010074 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI NECKERS, LEONARD · 1996 to 2008
$3.7M
Lung Cancer ProgramZ01BC010854 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIACCONE, GIUSEPPE · 2007 to 2008
$2.6M
Lung Cancer ProgramZIABC010854 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIACCONE, GIUSEPPE · 2009 to 2009
$1.6M
Post-translational modifications of Hsp90 that impact drug efficacyZ01BC011032 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NECKERS, LEONARD · 2008 to 2008
$664k
Lung Cancer Stem Cell CoreZ01BC011051 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GIACCONE, GIUSEPPE · 2008 to 2008
$259k
6 · The paper itself

Abstract

backgroundLung cancer causes approximately 1.2 million deaths per year worldwide, and non-small cell lung cancer (NSCLC) represents 85% of all lung cancers. Understanding the molecular events in non-small cell lung cancer (NSCLC) is essential to improve early diagnosis and treatment for this disease. METHODOLOGY AND PRINCIPAL

findingsIn an attempt to identify novel NSCLC related genes, we performed a genome-wide screening of chromosomal copy number changes affecting gene expression using microarray based comparative genomic hybridization and gene expression arrays on 32 radically resected tumor samples from stage I and II NSCLC patients. An integrative analysis tool was applied to determine whether chromosomal copy number affects gene expression. We identified a deletion on 14q32.2-33 as a common alteration in NSCLC (44%), which significantly influenced gene expression for HSP90, residing on 14q32. This deletion was correlated with better overall survival (P = 0.008), survival was also longer in patients whose tumors had low expression levels of HSP90. We extended the analysis to three independent validation sets of NSCLC patients, and confirmed low HSP90 expression to be related with longer overall survival (P = 0.003, P = 0.07 and P = 0.04). Furthermore, in vitro treatment with an HSP90 inhibitor had potent antiproliferative activity in NSCLC cell lines.

conclusionsWe suggest that targeting HSP90 will have clinical impact for NSCLC patients.

Indexed as

Gene DosageGene Expression Regulation, NeoplasticAdenocarcinomaCarcinoma, Large CellCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellChromosome AberrationsChromosomes, Human, Pair 14FemaleFollow-Up StudiesGenome, HumanHSP90 Heat-Shock ProteinsHumansLung NeoplasmsMaleNeoplasm StagingHSP90 Heat-Shock ProteinsRNA, Messenger

Identifiers

PMID18320023
PMCPMC2254495
OpenAlexW2114331359

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.