Evidence map›Paper›PMID 18316179›Full record

ArticleMechanisms of development

Mesodermal expression of the C. elegans HMX homolog mls-2 requires the PBC homolog CEH-20.

Yuan Jiang, Herong Shi, Nirav M Amin, Ibrahim Sultan, Jun Liu

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Transcriptional regulation of gene expression in C. elegans.WormBook : the online review of C. elegans biology · 2013
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Hox specificity unique roles for cofactors and collaborators.Current topics in developmental biology · 2009
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuan JiangDepartment of Molecular Biology and Genetics, Cornell University, 439 Biotechnology Building, Ithaca, NY 14853, USA.
Herong Shi
Nirav M Amin
Ibrahim Sultan
Jun Liu
Cornell University · US

Funding

Mesodermal Cell Fate Specification in C.elegansR01GM066953 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIU, JUN · 2002 to 2016
$3.9M
NIGMS NIH HHS R01 GM066953
6 · The paper itself

Abstract

Metazoan development proceeds primarily through the regulated expression of genes encoding transcription factors and components of cell signaling pathways. One way to decipher the complex developmental programs is to assemble the underlying gene regulatory networks by dissecting the cis-regulatory modules that direct temporal-spatial expression of developmental genes and identify corresponding trans-regulatory factors. Here, we focus on the regulation of a HMX homoebox gene called mls-2, which functions at the intersection of a network that regulates cleavage orientation, cell proliferation and fate specification in the Caenorhabditis elegans postembryonic mesoderm. In addition to its transient expression in the postembryonic mesodermal lineage, the M lineage, mls-2 expression is detected in a subset of embryonic cells, in three pairs of head neurons and transiently in the somatic gonad. Through mutational analysis of the mls-2 promoter, we identified two elements (E1 and E2) involved in regulating the temporal-spatial expression of mls-2. In particular, we showed that one of the elements (E1) required for mls-2 expression in the M lineage contains two critical putative PBC-Hox binding sites that are evolutionarily conserved in C. briggsae and C. remanei. Furthermore, the C. elegans PBC homolog CEH-20 is required for mls-2 expression in the M lineage. Our data suggest that mls-2 might be a direct target of CEH-20 in the M lineage and that the regulation of CEH-20 on mls-2 is likely Hox-independent.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBase SequenceBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsCell LineageDNA Mutational AnalysisGene DeletionHomeodomain ProteinsMesodermMolecular Sequence DataNeuronsPromoter Regions, GeneticSequence Homology, Nucleic AcidTranscription FactorsCaenorhabditis elegans Proteinsceh-20 protein, C elegansHomeodomain ProteinsMLS-2 protein, C elegansTranscription Factors

Identifiers

PMID18316179
PMCPMC2441446
OpenAlexW2014198636

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.