Evidence map›Paper›PMID 18313399›Full record

ArticleBiochemical and biophysical research communications2008

Molluscan mobile elements similar to the vertebrate Recombination-Activating Genes.

Yuri Panchin, Leonid L Moroz

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

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  14. Gene flow and biological conflict systems in the origin and evolution of eukaryotes.Frontiers in cellular and infection microbiology · 2012
    Article
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  18. Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.Critical reviews in biochemistry and molecular biology · 2010
    Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Yuri PanchinInstitute for Information Transmission Problems, Russian Academy of Science, 127994 Moscow, Russia.
Leonid L Moroz
Institute for Information Transmission Problems · RUUniversity of Florida · US

Funding

Genomic Approaches to Neuronal Diversity and PlasticityP50HG002806 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JU, JINGYUE · 2003 to 2007
$13.9M
NOS-INDEPENDENT NO PRODUCTION IN THE NERVOUS SYSTEMR01NS039103 · NINDS · UNIVERSITY OF FLORIDA · PI MOROZ, LEONID L · 1999 to 2002
$530k
Genomic Dissection of Circuit DynamicsR21RR025699 · NCRR · UNIVERSITY OF FLORIDA · PI BUCHER, DIRK MARTIN, MOROZ, LEONID L · 2009 to 2010
$408k
NCRR NIH HHS R21 RR025699NHGRI NIH HHS P50 HG002806NINDS NIH HHS R01 NS039103
6 · The paper itself

Abstract

Animal genomes contain approximately 20,000 genes. Additionally millions of genes for antigen receptors are generated in cells of the immune system from the sets of separate gene segments by a mechanism known as the V(D)J somatic recombination. The components of the V(D)J recombination system, Recombination-Activating Gene proteins (RAG1 and RAG2) and recombination signal sequence (RSS), are thought to have "entered" the vertebrate genome as a hypothetical "RAG transposon". Recently discovered mobile elements have terminal inverted repeats (TIRs) similar to RSS and may encode proteins with a different degree of similarity to RAG1. We describe a novel N-RAG-TP transposon identified from the sea slug Aplysia californica that encodes a protein similar to the N-terminal part of RAG1 in vertebrates. This refines the "RAG transposon" hypothesis and allows us to propose a scenario for V(D)J recombination machinery evolution from a relic transposon related to the existing mobile elements N-RAG-TP, Chapaev, and Transib.

Indexed as

Gene RearrangementAnimalsAplysiaBase SequenceDNA Transposable ElementsEvolution, MolecularFrameshifting, RibosomalHomeodomain ProteinsMolecular Sequence DataProtein BiosynthesisDNA Transposable ElementsHomeodomain ProteinsRAG-1 protein

Identifiers

PMID18313399
PMCPMC2719772
OpenAlexW2024843320

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.