Evidence map›Paper›PMID 18312624›Full record

ArticleBMC medical genetics2008

Evaluating the association of common PBX1 variants with type 2 diabetes.

Konsta Duesing, Guillaume Charpentier, Michel Marre, Jean Tichet, Serge Hercberg, Beverley Balkau, Philippe Froguel, Fernando Gibson

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 35 citations in OpenAlex.

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  6. Exon sequencing reveals that missense mutation ofInternational journal of clinical and experimental pathology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Konsta DuesingGenomic Medicine, Imperial College London, Hammersmith Campus, Du Cane Rd, London W12 0NN, UK. k.duesing@imperial.ac.uk
Guillaume Charpentier
Michel Marre
Jean Tichet
Serge Hercberg
Beverley Balkau
Philippe Froguel
Fernando Gibson
Hammersmith Hospital · GBCentre Hospitalier Laennec · FRHôpital Bichat-Claude-Bernard · FRInstitut de Biologie de Lille · FRUniversité Paris-Sud · FRUniversité Sorbonne Paris Nord · FR

Funding

Medical Research Council G0000477Medical Research Council G0600331Medical Research Council G0700342Wellcome TrustWellcome Trust GR065414MF
6 · The paper itself

Abstract

backgroundPBX1 is a biological candidate gene for type 2 diabetes at the 1q21-q24 susceptibility locus. The aim of this study was to evaluate the association of common PBX1 variants with type 2 diabetes in French Caucasian subjects.

methodsEmploying a case-control design, we genotyped 39 SNPs spanning the PBX1 locus in 3,093 subjects to test for association with type 2 diabetes.

resultsSeveral PBX1 SNPs, including the G21S coding SNP rs2275558, were nominally associated with type 2 diabetes but the strongest result was obtained with the intron 2 SNP rs2792248 (P = 0.004, OR 1.20 [95% CI 1.06-1.37]). The SNPSpD multiple testing correction method gave a significance threshold of P = 0.002 for the 39 SNPs genotyped, indicating that the rs2792248 association did not survive multiple testing adjustment. SNP rs2792248 did not show evidence of association with the French 1q linkage signal (P = 0.31; weighted NPL score 2.16). None of the PBX1 SNPs nominally associated with type 2 diabetes were associated with a range of quantitative metabolic traits in the normoglycemic control subjects

conclusionThe available data does not support a major influence of common PBX1 variants on type 2 diabetes susceptibility or quantitative metabolic traits. In order to make progress in identifying the elusive susceptibility variants in the 1q region it will be necessary to carry out further large association studies, meta-analyses of existing data from individual studies, and deep resequencing of the 1q region.

Indexed as

Genetic VariationAgedAllelesCase-Control StudiesChi-Square DistributionChromosome MappingCohort StudiesDiabetes Mellitus, Type 2DNA-Binding ProteinsFemaleFranceGenetic Predisposition to DiseaseGenotypeHumansLinkage DisequilibriumMaleDNA-Binding ProteinsPBX1 protein, humanPre-B-Cell Leukemia Transcription Factor 1Proto-Oncogene Proteins

Identifiers

PMID18312624
PMCPMC2292156
OpenAlexW2616583578

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.