Evidence map›Paper›PMID 18312275›Full record

ArticleMolecular microbiology2008

Characterization of Trypanosoma brucei dihydroorotate dehydrogenase as a possible drug target; structural, kinetic and RNAi studies.

Tracy L Arakaki, Frederick S Buckner, J Robert Gillespie, Nicholas A Malmquist, Margaret A Phillips, Oleksandr Kalyuzhniy, Joseph R Luft, George T Detitta, Christophe L M J Verlinde, Wesley C Van Voorhis and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 83 citations in OpenAlex.

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  13. International journal of molecular sciences · 2018
    Article
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  15. Review
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  17. Pyrimidine metabolism in schistosomes: A comparison with other parasites and the search for potential chemotherapeutic targets.Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology · 2017
    Review
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Tracy L ArakakiDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Frederick S Buckner
J Robert Gillespie
Nicholas A Malmquist
Margaret A Phillips
Oleksandr Kalyuzhniy
Joseph R Luft
George T Detitta
Christophe L M J Verlinde
Wesley C Van Voorhis
Wim G J Hol
Ethan A Merritt
University of Washington · USHauptman-Woodward Medical Research Institute · USThe University of Texas Southwestern Medical Center · US

Funding

Structural Genomics of Pathogenic ProtozoaP50GM064655 · NIGMS · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2001 to 2004
$25.3M
Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Targeting malarial dihydroorotate dehydrogenaseR01AI053680 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PHILLIPS, MARGARET A. · 2004 to 2008
$1.7M
Targeting malarial dihydroorotate dehydrogenaseR21AI053680 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI PHILLIPS, MARGARET A. · 2003 to 2003
$491k
Targeting Malarial Dihydroorotate DehydrogenaseR56AI053680 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI PHILLIPS, MARGARET A., RATHOD, PRADIPSINH K. · 2010 to 2010
$486k
NIAID NIH HHS AI053680NIAID NIH HHS AI067921NIAID NIH HHS P01 AI067921NIAID NIH HHS R01 AI053680NIAID NIH HHS R21 AI053680NIAID NIH HHS R56 AI053680NIGMS NIH HHS GM64655NIGMS NIH HHS P50 GM064655
6 · The paper itself

Abstract

Nucleotide biosynthesis pathways have been reported to be essential in some protozoan pathogens. Hence, we evaluated the essentiality of one enzyme in the pyrimidine biosynthetic pathway, dihydroorotate dehydrogenase (DHODH) from the eukaryotic parasite Trypanosoma brucei through gene knockdown studies. RNAi knockdown of DHODH expression in bloodstream form T. brucei did not inhibit growth in normal medium, but profoundly retarded growth in pyrimidine-depleted media or in the presence of the known pyrimidine uptake antagonist 5-fluorouracil (5-FU). These results have significant implications for the development of therapeutics to combat T. brucei infection. Specifically, a combination therapy including a T. brucei-specific DHODH inhibitor plus 5-FU may prove to be an effective therapeutic strategy. We also show that this trypanosomal enzyme is inhibited by known inhibitors of bacterial Class 1A DHODH, in distinction to the sensitivity of DHODH from human and other higher eukaryotes. This selectivity is supported by the crystal structure of the T. brucei enzyme, which is reported here at a resolution of 1.95 A. Additional research, guided by the crystal structure described herein, is needed to identify potent inhibitors of T. brucei DHODH.

Indexed as

RNA InterferenceAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayDihydroorotate DehydrogenaseDrug DesignFluorouracilHumansKineticsModels, MolecularMolecular Sequence DataOxidation-ReductionOxidoreductases Acting on CH-CH Group DonorsProtozoan ProteinsPyrimidinesDihydroorotate DehydrogenaseFluorouracilOxidoreductases Acting on CH-CH Group DonorsProtozoan ProteinspyrimidinePyrimidines

Identifiers

PMID18312275
PMCPMC2877593
OpenAlexW2071315496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.