Evidence map›Paper›PMID 18311141›Full record

ArticleNature genetics2008

Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes.

Michele Markstein, Chrysoula Pitsouli, Christians Villalta, Susan E Celniker, Norbert Perrimon

Abstract read
In one paragraph

Article in Nature genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 383 papers.

0numbers the graph read from it
0cells of the map it votes in
383citing papers in PubMed
34.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

383 citing papers in PubMed, 557 citations in OpenAlex.

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  10. Genome-Wide Landscape of Position Effect Variegation inJournal of fungi (Basel, Switzerland) · 2026
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323 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Michele MarksteinDepartment of Genetics and Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA. mmarkstein@genetics.med.harvard.edu
Chrysoula Pitsouli
Christians Villalta
Susan E Celniker
Norbert Perrimon
Harvard University · USHoward Hughes Medical Institute · USLawrence Berkeley National Laboratory · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

A major obstacle to creating precisely expressed transgenes lies in the epigenetic effects of the host chromatin that surrounds them. Here we present a strategy to overcome this problem, employing a Gal4-inducible luciferase assay to systematically quantify position effects of host chromatin and the ability of insulators to counteract these effects at phiC31 integration loci randomly distributed throughout the Drosophila genome. We identify loci that can be exploited to deliver precise doses of transgene expression to specific tissues. Moreover, we uncover a previously unrecognized property of the gypsy retrovirus insulator to boost gene expression to levels severalfold greater than at most or possibly all un-insulated loci, in every tissue tested. These findings provide the first opportunity to create a battery of transgenes that can be reliably expressed at high levels in virtually any tissue by integration at a single locus, and conversely, to engineer a controlled phenotypic allelic series by exploiting several loci. The generality of our approach makes it adaptable to other model systems to identify and modify loci for optimal transgene expression.

Indexed as

Recombination, GeneticAnimalsAnimals, Genetically ModifiedAttachment Sites, MicrobiologicalChromatinCytoskeletal ProteinsDrosophila melanogasterDrosophila ProteinsFemaleGene Expression RegulationGenome, InsectHSP70 Heat-Shock ProteinsInsulator ElementsLarvaMolecular Sequence DataMyogenic Regulatory FactorsARP1 protein, S cerevisiaeAttB protein, DrosophilaChromatinCytoskeletal ProteinsDrosophila ProteinsHSP70 Heat-Shock ProteinsMef2 protein, DrosophilaMyogenic Regulatory FactorsN protein, DrosophilaReceptors, NotchSaccharomyces cerevisiae Proteins

Identifiers

PMID18311141
PMCPMC2330261
OpenAlexW2037611829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.