Evidence map›Paper›PMID 18309295›Full record

ArticleThe EMBO journal2008

Drosophila Ebi mediates Snail-dependent transcriptional repression through HDAC3-induced histone deacetylation.

Dai Qi, Mattias Bergman, Hitoshi Aihara, Yutaka Nibu, Mattias Mannervik

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  6. Review
  7. Frontiers in plant science · 2018
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  11. Review
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  16. Transcriptional repression via antilooping in the Drosophila embryo.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Dai QiWenner-Gren Institute, Developmental Biology, Stockholm University, Stockholm, Sweden.
Mattias Bergman
Hitoshi Aihara
Yutaka Nibu
Mattias Mannervik
Cornell University · USWenner-Gren Foundations · SEStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Drosophila Snail protein is a transcriptional repressor that is necessary for mesoderm formation. Here, we identify the Ebi protein as an essential Snail co-repressor. In ebi mutant embryos, Snail target genes are derepressed in the presumptive mesoderm. Ebi and Snail interact both genetically and physically. We identify a Snail domain that is sufficient for Ebi binding, and which functions independently of another Snail co-repressor, Drosophila CtBP. This Ebi interaction domain is conserved among all insect Snail-related proteins, is a potent repression domain and is required for Snail function in transgenic embryos. In mammalian cells, the Ebi homologue TBL1 is part of the NCoR/SMRT-HDAC3 (histone deacetylase 3) co-repressor complex. We found that Ebi interacts with Drosophila HDAC3, and that HDAC3 knockdown or addition of a HDAC inhibitor impairs Snail-mediated repression in cells. In the early embryo, Ebi is recruited to a Snail target gene in a Snail-dependent manner, which coincides with histone hypoacetylation. Our results demonstrate that Snail requires the combined activities of Ebi and CtBP, and indicate that histone deacetylation is a repression mechanism in early Drosophila development.

Indexed as

AnimalsBase SequenceCell Cycle ProteinsCells, CulturedDown-RegulationDrosophilaDrosophila ProteinsFemaleGTP-Binding ProteinsHistone Deacetylase 3Histone DeacetylasesHistonesMaleMolecular Sequence DataRepressor ProteinsSnail Family Transcription FactorsCell Cycle ProteinsDrosophila Proteinsebi protein, DrosophilaGTP-Binding ProteinsHistone Deacetylase 3Histone DeacetylasesHistonesRepressor ProteinsSnail Family Transcription Factorssna protein, DrosophilaTranscription Factors

Identifiers

PMID18309295
PMCPMC2274935
OpenAlexW2171667375

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.