Evidence map›Paper›PMID 18308289›Full record

ArticleAmerican journal of human genetics2008

Array-based gene discovery with three unrelated subjects shows SCARB2/LIMP-2 deficiency causes myoclonus epilepsy and glomerulosclerosis.

Samuel F Berkovic, Leanne M Dibbens, Alicia Oshlack, Jeremy D Silver, Marina Katerelos, Danya F Vears, Renate Lüllmann-Rauch, Judith Blanz, Ke Wei Zhang, Jim Stankovich and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 255 citations in OpenAlex.

  1. Article
  2. A CGG Repeat Expansion in CSNK1E Associated with Progressive Myoclonic Epilepsy with Incomplete Penetrance.Movement disorders : official journal of the Movement Disorder Society · 2025
    Article
  3. The Life of a Kidney Podocyte.Acta physiologica (Oxford, England) · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Collapsing glomerulopathy: unraveling varied pathogeneses.Current opinion in nephrology and hypertension · 2023
    Review
  12. Article
  13. Article
  14. Review
  15. A novel homozygous splice-site mutation in SCARB2 is associated with progressive myoclonic epilepsy with renal failure.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  16. Miglustat Therapy forNeurology. Genetics · 2021
    Article
  17. Review
  18. Article
  19. Movement Disorders and Renal Diseases.Movement disorders clinical practice · 2020
    Review
  20. Article

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 10 institutions in 4 countries.

Samuel F BerkovicDepartment of Medicine, Austin Health and Northern Health, Heidelberg, Victoria 3081, Australia. s.berkovic@unimelb.edu.au
Leanne M Dibbens
Alicia Oshlack
Jeremy D Silver
Marina Katerelos
Danya F Vears
Renate Lüllmann-Rauch
Judith Blanz
Ke Wei Zhang
Jim Stankovich
Renate M Kalnins
John P Dowling
Eva Andermann
Frederick Andermann
Enrico Faldini
Rudi D'Hooge
Lata Vadlamudi
Richard A Macdonell
Bree L Hodgson
Marta A Bayly
Judy Savige
John C Mulley
Gordon K Smyth
David A Power
Paul Saftig
Melanie Bahlo
Austin Health · AUWalter and Eliza Hall Institute of Medical Research · AUNorthern Health · AUKiel University · DEKU Leuven · BEMontreal Neurological Institute and Hospital · CAUniversity of Adelaide · AUWomen's and Children's Hospital · AUThe Alfred Hospital · AUUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Action myoclonus-renal failure syndrome (AMRF) is an autosomal-recessive disorder with the remarkable combination of focal glomerulosclerosis, frequently with glomerular collapse, and progressive myoclonus epilepsy associated with storage material in the brain. Here, we employed a novel combination of molecular strategies to find the responsible gene and show its effects in an animal model. Utilizing only three unrelated affected individuals and their relatives, we used homozygosity mapping with single-nucleotide polymorphism chips to localize AMRF. We then used microarray-expression analysis to prioritize candidates prior to sequencing. The disorder was mapped to 4q13-21, and microarray-expression analysis identified SCARB2/Limp2, which encodes a lysosomal-membrane protein, as the likely candidate. Mutations in SCARB2/Limp2 were found in all three families used for mapping and subsequently confirmed in two other unrelated AMRF families. The mutations were associated with lack of SCARB2 protein. Reanalysis of an existing Limp2 knockout mouse showed intracellular inclusions in cerebral and cerebellar cortex, and the kidneys showed subtle glomerular changes. This study highlights that recessive genes can be identified with a very small number of subjects. The ancestral lysosomal-membrane protein SCARB2/LIMP-2 is responsible for AMRF. The heterogeneous pathology in the kidney and brain suggests that SCARB2/Limp2 has pleiotropic effects that may be relevant to understanding the pathogenesis of other forms of glomerulosclerosis or collapse and myoclonic epilepsies.

Indexed as

Genes, RecessiveAnimalsCerebellar CortexChromosome MappingChromosomes, Human, Pair 4Gene ExpressionGenetic LinkageGenotypeGlomerulonephritisHumansLysosomal Membrane ProteinsMiceMice, KnockoutMyoclonic Epilepsies, ProgressiveOligonucleotide Array Sequence AnalysisReceptors, ScavengerLysosomal Membrane ProteinsReceptors, ScavengerSCARB2 protein, human

Identifiers

PMID18308289
PMCPMC2427287
OpenAlexW2068081016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.