ArticleBMC bioinformatics2008
DBMLoc: a Database of proteins with multiple subcellular localizations.
Article in BMC bioinformatics, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Graph algorithms for predicting subcellular localization at the pathway levelPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2023Article
- Tools for the Recognition of Sorting Signals and the Prediction of Subcellular Localization of Proteins From Their Amino Acid Sequences.Frontiers in genetics · 2020Review
- Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting.PLoS computational biology · 2019Article
- PMLPR: A novel method for predicting subcellular localization based on recommender systems.Scientific reports · 2018Article
- Article
- Sparse regressions for predicting and interpreting subcellular localization of multi-label proteins.BMC bioinformatics · 2016Article
- PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures.Nucleic acids research · 2016Article
- Multiple-Localization and Hub Proteins.PloS one · 2016Article
- Protein (multi-)location prediction: utilizing interdependencies via a generative model.Bioinformatics (Oxford, England) · 2015Article
- Changes in the nuclear proteome of developing wheat (Triticum aestivum L.) grain.Frontiers in plant science · 2015Article
- Protein (multi-)location prediction: using location inter-dependencies in a probabilistic framework.Algorithms for molecular biology : AMB · 2014Article
- HMPAS: Human Membrane Protein Analysis System.Proteome science · 2013Article
- Article
- A multi-label predictor for identifying the subcellular locations of singleplex and multiplex eukaryotic proteins.PloS one · 2012Article
- PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.Nucleic acids research · 2011Article
- YLoc--an interpretable web server for predicting subcellular localization.Nucleic acids research · 2010Article
- Going from where to why--interpretable prediction of protein subcellular localization.Bioinformatics (Oxford, England) · 2010Article
- CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources.BMC microbiology · 2010Article
- Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.BMC bioinformatics · 2009Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSubcellular localization information is one of the key features to protein function research. Locating to a specific subcellular compartment is essential for a protein to function efficiently. Proteins which have multiple localizations will provide more clues. This kind of proteins may take a high proportion, even more than 35%. DESCRIPTION: We have developed a database of proteins with multiple subcellular localizations, designated DBMLoc. The initial release contains 10470 multiple subcellular localization-annotated entries. Annotations are collected from primary protein databases, specific subcellular localization databases and literature texts. All the protein entries are cross-referenced to GO annotations and SwissProt. Protein-protein interactions are also annotated. They are classified into 12 large subcellular localization categories based on GO hierarchical architecture and original annotations. Download, search and sequence BLAST tools are also available on the website.
conclusionDBMLoc is a protein database which collects proteins with more than one subcellular localization annotation. It is freely accessed at http://www.bioinfo.tsinghua.edu.cn/DBMLoc/index.htm.
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