ArticleGenome biology2008
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Article in Genome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- Water stress resilient cereal crops: Lessons from wild relatives.Journal of integrative plant biology · 2022Review
- Conversion between 100-million-year-old duplicated genes contributes to rice subspecies divergence.BMC genomics · 2021Article
- DNA barcoding of Oryza: conventional, specific, and super barcodes.Plant molecular biology · 2021Article
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
- Proteomic analysis of the rice (Oryza officinalis) provides clues on molecular tagging of proteins for brown planthopper resistance.BMC plant biology · 2019Article
- Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.Scientific reports · 2018Article
- Comparison ofThe Plant cell · 2018Article
- The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance.Nature communications · 2018Article
- Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.Nature genetics · 2018Article
- Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species.PloS one · 2017Article
- Genetic shift in local rice populations during rice breeding programs in the northern limit of rice cultivation in the world.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.Nature genetics · 2014Article
- Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping.Genetics · 2014Article
- Genomic, regulatory and epigenetic mechanisms underlying duplicated gene evolution in the natural allotetraploid Oryza minuta.BMC genomics · 2014Article
- Conservation and utilization of African Oryza genetic resources.Rice (New York, N.Y.) · 2013Article
- Effects of plant genotype and nitrogen level on bacterial communities in rice shoots and roots.Microbes and environments · 2013Article
- Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.Nature communications · 2013Article
- A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.BMC research notes · 2012Article
- Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes.PloS one · 2012Article
- Advances in BAC-based physical mapping and map integration strategies in plants.Journal of biomedicine & biotechnology · 2012Review
Corrections and comments
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Authors and funding
18 authors.
Funding
Abstract
We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.