Evidence map›Paper›PMID 18303118›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

The enzyme mechanism of nitrite reductase studied at single-molecule level.

Sofya Kuznetsova, Gerhild Zauner, Thijs J Aartsma, Hans Engelkamp, Nikos Hatzakis, Alan E Rowan, Roeland J M Nolte, Peter C M Christianen, Gerard W Canters

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Enzyme molecules in solitary confinement.Molecules (Basel, Switzerland) · 2014
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Redox cycling and kinetic analysis of single molecules of solution-phase nitrite reductase.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sofya KuznetsovaLeiden Institute of Chemistry, Gorlaeus Laboratories, Leiden University, P.O. Box 9502, 2300 RA, Leiden, The Netherlands.
Gerhild Zauner
Thijs J Aartsma
Hans Engelkamp
Nikos Hatzakis
Alan E Rowan
Roeland J M Nolte
Peter C M Christianen
Gerard W Canters
Radboud University Nijmegen · NLLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A generic method is described for the fluorescence "readout" of the activity of single redox enzyme molecules based on Förster resonance energy transfer from a fluorescent label to the enzyme cofactor. The method is applied to the study of copper-containing nitrite reductase from Alcaligenes faecalis S-6 immobilized on a glass surface. The parameters extracted from the single-molecule fluorescence time traces can be connected to and agree with the macroscopic ensemble averaged kinetic constants. The rates of the electron transfer from the type 1 to the type 2 center and back during turnover exhibit a distribution related to disorder in the catalytic site. The described approach opens the door to single-molecule mechanistic studies of a wide range of redox enzymes and the precise investigation of their internal workings.

Indexed as

Electron TransportAlcaligenes faecalisEnzymes, ImmobilizedFluorescence Resonance Energy TransferKineticsNitrite ReductasesEnzymes, Immobilizednitrite reductase, copper-containingNitrite Reductases

Identifiers

PMID18303118
PMCPMC2265120
OpenAlexW2149865300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.