ArticleBMC plant biology2008
Transcriptional profiling of Medicago truncatula meristematic root cells.
Article in BMC plant biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Root-Knot-Nematode-Encoded CEPs Increase Nitrogen Assimilation.Life (Basel, Switzerland) · 2023Article
- Molecular Bases for the Regulation of Adventitious Root Generation in Plants.Frontiers in plant science · 2021Review
- The Medicago truncatula nodule identity gene MtNOOT1 is required for coordinated apical-basal development of the root.BMC plant biology · 2019Article
- Gibberellins negatively regulate the development of Medicago truncatula root system.Scientific reports · 2019Article
- Diverse Peptide Hormones Affecting Root Growth Identified in theMolecular & cellular proteomics : MCP · 2018Article
- MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency.Scientific reports · 2017Article
- Expression Analysis of PIN Genes in Root Tips and Nodules of Medicago truncatula.International journal of molecular sciences · 2016Article
- Transcriptome analysis of secondary cell wall development in Medicago truncatula.BMC genomics · 2016Article
- Integrated metabolomics and transcriptomics reveal enhanced specialized metabolism in Medicago truncatula root border cells.Plant physiology · 2015Article
- De Novo Characterization of the Mung Bean Transcriptome and Transcriptomic Analysis of Adventitious Rooting in Seedlings Using RNA-Seq.PloS one · 2015Article
- microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula.Planta · 2013Article
- Rhizobial infection is associated with the development of peripheral vasculature in nodules of Medicago truncatula.Plant physiology · 2013Article
- Border sequences of Medicago truncatula CLE36 are specifically cleaved by endoproteases common to the extracellular fluids of Medicago and soybean.Journal of experimental botany · 2011Article
- Control of somatic embryogenesis and embryo development by AP2 transcription factors.Plant molecular biology · 2010Article
- The Medicago truncatula gene expression atlas web server.BMC bioinformatics · 2009Article
- An expression database for roots of the model legume Medicago truncatula under salt stress.BMC genomics · 2009Article
- PathExpress update: the enzyme neighbourhood method of associating gene-expression data with metabolic pathways.Nucleic acids research · 2009Article
- Article
- Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula.Molecular genetics and genomics : MGG · 2009Article
- Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures.BMC plant biology · 2008Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe root apical meristem of crop and model legume Medicago truncatula is a significantly different stem cell system to that of the widely studied model plant species Arabidopsis thaliana. In this study we used the Affymetrix Medicago GeneChip(R) to compare the transcriptomes of meristem and non-meristematic root to identify root meristem specific candidate genes.
resultsUsing mRNA from root meristem and non-meristem we were able to identify 324 and 363 transcripts differentially expressed from the two regions. With bioinformatics tools developed to functionally annotate the Medicago genome array we could identify significant changes in metabolism, signalling and the differentially expression of 55 transcription factors in meristematic and non-meristematic roots.
conclusionThis is the first comprehensive analysis of M. truncatula root meristem cells using this genome array. This data will facilitate the mapping of regulatory and metabolic networks involved in the open root meristem of M. truncatula and provides candidates for functional analysis.
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