Evidence map›Paper›PMID 18296443›Full record

ArticleThe Journal of biological chemistry2008

HIV-1 Nef binds PACS-2 to assemble a multikinase cascade that triggers major histocompatibility complex class I (MHC-I) down-regulation: analysis using short interfering RNA and knock-out mice.

Katelyn M Atkins, Laurel Thomas, Robert T Youker, Melanie J Harriff, Franco Pissani, Huihong You, Gary Thomas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 87 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Novel role of HIV-1 Nef in regulating the ubiquitination of cellular proteins.Frontiers in cellular and infection microbiology · 2023
    Article
  8. Review
  9. Article
  10. Host and Viral Factors Influencing Interplay between the Macrophage and HIV-1.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2019
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.Database : the journal of biological databases and curation · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Katelyn M AtkinsVollum Institute, Portland, Oregon 97239, USA.
Laurel Thomas
Robert T Youker
Melanie J Harriff
Franco Pissani
Huihong You
Gary Thomas
Vollum Institute · US

Funding

Program in Molecular and Cellular BiosciencesT32GM071338 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MASLEN, CHERYL L · 2005 to 2020
$3.5M
Role of PACS proteins in polycystin-2 trafficking and ADPKDR01DK037274 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI THOMAS, GARY · 1986 to 2010
$3.3M
Role of PACS-1 in HIV-1 ImmunoevasionR01AI049793 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI THOMAS, GARY · 2001 to 2007
$2.3M
TRAINING PROGRAM IN NEURONAL SIGNALINGT32NS007381 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI JAHR, CRAIG E · 1995 to 2011
$1.9M
Regulation of Polycystin-2 TraffickingF32DK076343 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI YOUKER, ROBERT THOMAS · 2007 to 2008
$96k
NIAID NIH HHS R01 AI49793NIDDK NIH HHS DK076343NIDDK NIH HHS R01 DK37274NIGMS NIH HHS T32 GM71338NINDS NIH HHS T32 NS007381
6 · The paper itself

Abstract

Human immunodeficiency virus, type 1, negative factor (Nef) initiates down-regulation of cell-surface major histocompatibility complex-I (MHC-I) by assembling an Src family kinase (SFK)-ZAP70/Syk-phosphoinositide 3-kinase (PI3K) cascade through the sequential actions of two sites, Nef EEEE(65) and PXXP(75). The internalized MHC-I molecules are then sequestered in endosomal compartments by a process requiring Nef Met(20). How Nef assembles the multikinase cascade to trigger the MHC-I down-regulation pathway is unknown. Here we report that EEEE(65)-dependent binding to the sorting protein PACS-2 targets Nef to the paranuclear region, enabling PXXP(75) to bind and activate a trans-Golgi network (TGN)-localized SFK. This SFK then phosphorylates ZAP-70 to recruit class I PI3K by interaction with the p85 C-terminal Src homology 2 domain. Using splenocytes and embryonic fibroblasts from PACS-2(-/-) mice, we confirm genetically that Nef requires PACS-2 to localize to the paranuclear region and assemble the multikinase cascade. Moreover, genetic loss of PACS-2 or inhibition of class I PI3K prevents Nef-mediated MHC-I down-regulation, demonstrating that short interfering RNA knockdown of PACS-2 phenocopies the gene knock-out. This PACS-2-dependent targeting pathway is not restricted to Nef, because PACS-2 is also required for trafficking of an endocytosed cation-independent mannose 6-phosphate receptor reporter from early endosomes to the TGN. Together, these results demonstrate PACS-2 is required for Nef action and sorting of itinerant membrane cargo in the TGN/endosomal system.

Indexed as

Gene Expression Regulation, ViralGenes, MHC Class IAdaptor Proteins, Signal TransducingAnimalsEndocytosisEndosomesHeLa CellsHIV-1HumansMiceMice, KnockoutModels, Biologicalnef Gene Products, Human Immunodeficiency VirusPhosphorylationtrans-Golgi NetworkVesicular Transport ProteinsAdaptor Proteins, Signal Transducingnef Gene Products, Human Immunodeficiency VirusPACS2 protein, humanPacs2 protein, mouseVesicular Transport Proteins

Identifiers

PMID18296443
PMCPMC2431057
OpenAlexW2018879927

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.