Evidence map›Paper›PMID 18295234›Full record

ArticleJournal of molecular biology2008

Identification and structural characterization of a CBP/p300-binding domain from the ETS family transcription factor GABP alpha.

Hyun-Seo Kang, Mary L Nelson, Cameron D Mackereth, Manuela Schärpf, Barbara J Graves, Lawrence P McIntosh

Abstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Ras signaling requires dynamic properties of Ets1 for phosphorylation-enhanced binding to coactivator CBP.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hyun-Seo KangDepartment of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada.
Mary L Nelson
Cameron D Mackereth
Manuela Schärpf
Barbara J Graves
Lawrence P McIntosh

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Transcriptional Control Mechanisms by ETS FactorsR01GM038663 · NIGMS · UNIVERSITY OF UTAH · PI GRAVES, BARBARA J · 1992 to 2015
$3.9M
RETROVIRAL TRANSCRIPTIONAL CONTROL MECHANISMSR29GM038663 · NIGMS · UNIVERSITY OF UTAH · PI GRAVES, BARBARA J · 1987 to 1991
–
NCI NIH HHS CA24014NCI NIH HHS P30 CA042014NIGMS NIH HHS GM38663NIGMS NIH HHS R01 GM038663
6 · The paper itself

Abstract

Using NMR spectroscopy, we identified and characterized a previously unrecognized structured domain near the N-terminus (residues 35-121) of the ETS family transcription factor GABP alpha. The monomeric domain folds as a five-stranded beta-sheet crossed by a distorted helix. Although globally resembling ubiquitin, the GABP alpha fragment differs in its secondary structure topology and thus appears to represent a new protein fold that we term the OST (On-SighT) domain. The surface of the GABP alpha OST domain contains two predominant clusters of negatively-charged residues suggestive of electrostatically driven interactions with positively-charged partner proteins. Following a best-candidate approach to identify such a partner, we demonstrated through NMR-monitored titrations and glutathione S-transferase pulldown assays that the OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300. This provides a direct structural link between GABP and a central component of the transcriptional machinery.

Indexed as

AnimalsBinding SitesGA-Binding Protein Transcription FactorMiceNuclear Magnetic Resonance, Biomolecularp300-CBP Transcription FactorsProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryGA-Binding Protein Transcription Factorp300-CBP Transcription Factors

Identifiers

PMID18295234
PMCPMC2486348

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.