Evidence map›Paper›PMID 18293939›Full record

ArticleBiochemistry2008

Examination of the mechanism of human brain aspartoacylase through the binding of an intermediate analogue.

Johanne Le Coq, Alexander Pavlovsky, Radhika Malik, Ruslan Sanishvili, Chengfu Xu, Ronald E Viola

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  3. Review
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  9. Article
  10. Enhanced brain distribution of modified aspartoacylase.Molecular genetics and metabolism · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Structures of aminoacylase 3 in complex with acetylated substrates.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Johanne Le CoqDepartment of Chemistry, University of Toledo, Toledo, Ohio 43606, USA.
Alexander Pavlovsky
Radhika Malik
Ruslan Sanishvili
Chengfu Xu
Ronald E Viola
University of Toledo · USArgonne National Laboratory · US

Funding

Theoretical and Computational ApproachesP01GM071790 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BABBITT, PATRICIA CLEMENT · 2004 to 2013
$15.5M
Probing the Enzymatic Basis of Canavan DiseaseR01NS045664 · NINDS · UNIVERSITY OF TOLEDO · PI VIOLA, RONALD EDWARD · 2005 to 2009
$1.1M
NCI NIH HHS Y1-CO-1020NIGMS NIH HHS GM71790NIGMS NIH HHS P01 GM071790NIGMS NIH HHS Y1-GM-1104NINDS NIH HHS NS45664NINDS NIH HHS R01 NS045664
6 · The paper itself

Abstract

Canavan disease is a fatal neurological disorder caused by the malfunctioning of a single metabolic enzyme, aspartoacylase, that catalyzes the deacetylation of N-acetyl-L-aspartate to produce L-aspartate and acetate. The structure of human brain aspartoacylase has been determined in complex with a stable tetrahedral intermediate analogue, N-phosphonomethyl-L-aspartate. This potent inhibitor forms multiple interactions between each of its heteroatoms and the substrate binding groups arrayed within the active site. The binding of the catalytic intermediate analogue induces the conformational ordering of several substrate binding groups, thereby setting up the active site for catalysis. The highly ordered binding of this inhibitor has allowed assignments to be made for substrate binding groups and provides strong support for a carboxypeptidase-type mechanism for the hydrolysis of the amide bond of the substrate, N-acetyl- l-aspartate.

Indexed as

AmidohydrolasesApoenzymesAspartic AcidBinding SitesBrainCarboxypeptidasesCatalysisCrystallography, X-RayEnzyme InhibitorsGlycosylationHumansMutagenesis, Site-DirectedOrganophosphorus CompoundsProtein BindingAmidohydrolasesApoenzymesAspartic AcidaspartoacylaseCarboxypeptidasesEnzyme InhibitorsN-phosphonomethylaspartic acidOrganophosphorus Compounds

Identifiers

PMID18293939
PMCPMC2666850
OpenAlexW1976935537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.