Evidence map›Paper›PMID 18293108›Full record

ArticleChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2008

Phylogenomics of the dog and fox family (Canidae, Carnivora) revealed by chromosome painting.

Alexander S Graphodatsky, Polina L Perelman, Natalya V Sokolovskaya, Violetta R Beklemisheva, Natalya A Serdukova, Gauthier Dobigny, Stephen J O'Brien, Malcolm A Ferguson-Smith, Fengtang Yang

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
8.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Hybridization in Canids-A Case Study of Pampas Fox (Animals : an open access journal from MDPI · 2023
    Article
  4. Article
  5. High-Quality Chromosome-Level Genome Assembly of the Corsac Fox (International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genetics of behavior in the silver fox.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
  14. Article
  15. Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2011
    Article
  16. Article
  17. Chromosome painting shows that skunks (Mephitidae, Carnivora) have highly rearranged karyotypes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 4 countries.

Alexander S GraphodatskyInstitute of Cytology and Genetics, SB RAS, Novosibirsk, 630090, Russia. graf@bionet.nsc.ru
Polina L Perelman
Natalya V Sokolovskaya
Violetta R Beklemisheva
Natalya A Serdukova
Gauthier Dobigny
Stephen J O'Brien
Malcolm A Ferguson-Smith
Fengtang Yang
Siberian Branch of the Russian Academy of Sciences · RUNational Cancer Institute · USInstitut de Recherche pour le Développement · FRInstitute of Cytology and Genetics · RUUniversity of Cambridge · GBWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Canid species (dogs and foxes) have highly rearranged karyotypes and thus represent a challenge for conventional comparative cytogenetic studies. Among them, the domestic dog is one of the best-mapped species in mammals, constituting an ideal reference genome for comparative genomic study. Here we report the results of genome-wide comparative mapping of dog chromosome-specific probes onto chromosomes of the dhole, fennec fox, and gray fox, as well as the mapping of red fox chromosome-specific probes onto chromosomes of the corsac fox. We also present an integrated comparative chromosome map between the species studied here and all canids studied previously. The integrated map demonstrates an extensive conservation of whole chromosome arms across different canid species. In addition, we have generated a comprehensive genome phylogeny for the Canidae on the basis of the chromosome rearrangements revealed by comparative painting. This genome phylogeny has provided new insights into the karyotypic relationships among the canids. Our results, together with published data, allow the formulation of a likely Canidae ancestral karyotype (CAK, 2n = 82), and reveal that at least 6-24 chromosomal fission/fusion events are needed to convert the CAK karyotype to that of the modern canids.

Indexed as

Chromosome PaintingGenomicsPhylogenyAnimalsDogsFoxesGenomeHumansMolecular ProbesMolecular Probes

Identifiers

PMID18293108
OpenAlexW2137831432

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.