Evidence map›Paper›PMID 18293034›Full record

ArticleCurrent microbiology2008

The shf gene of a Shigella flexneri homologue on the virulent plasmid pAA2 of enteroaggregative Escherichia coli 042 is required for firm biofilm formation.

Rika Fujiyama, Junichiro Nishi, Naoko Imuta, Koichi Tokuda, Kunihiro Manago, Yoshifumi Kawano

Abstract read
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Article in Current microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. EnteroaggregativeEcoSal Plus · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Inactivation of theMicroorganisms · 2020
    Article
  6. Article
  7. Review
  8. Tracing Back the Evolutionary Route of EnteroinvasiveFrontiers in cellular and infection microbiology · 2020
    Article
  9. Genetic and Virulence Profiles of EnteroaggregativeFrontiers in cellular and infection microbiology · 2020
    Article
  10. Article
  11. Draft Genome Sequence ofGenome announcements · 2018
    Article
  12. Article
  13. Review
  14. EnteroaggregativeCurrent tropical medicine reports · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Enteroaggregative Escherichia coli: An Emerging Enteric Food Borne Pathogen.Interdisciplinary perspectives on infectious diseases · 2010
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rika FujiyamaDepartment of Pediatrics, Kagoshima University Graduate School of Medical and Dental Sciences, Sakuragaoka 8-35-1, Kagoshima 890-8520, Japan.
Junichiro Nishi
Naoko Imuta
Koichi Tokuda
Kunihiro Manago
Yoshifumi Kawano
Kagoshima University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteroaggregative Escherichia coli (EAEC) is an increasingly important cause of diarrhea in both developing and industrialized countries, and is characterized by strong biofilm formation on the intestinal mucosa. Sequencing of the virulent plasmid pAA2 of the prototype EAEC 042 revealed a cluster of three open reading frames (ORFs; shf, capU, and virK) ca. 93% identical to a similar cluster located in Shigella flexneri. The function of the first ORF Shf protein is not known, but the closest well-characterized homologue is the IcaB protein of Staphylococcus epidermidis, which plays a crucial role in exopolysaccharide modification in bacterial biofilm formation. To investigate the role of this cluster in the virulence of EAEC, we mutated three genes at this locus. All the mutants maintained the aggregative phenotype in the liquid phase. However, the insertional mutant of shf formed a less abundant biofilm in a microtiter plate assay than did the wild type, while the capU mutant and the virK mutant did not. The complementation of the shf mutant with this cluster restored the thick biofilm similar to that of the wild type. The shf transcriptional level decreased in the transcriptional regulator aggR mutant and was restored when the mutant was complemented with aggR. These results suggest that the shf gene is required for the firm biofilm formation of EAEC 042, and transcription of the shf gene is dependent on AggR.

Indexed as

BiofilmsBacterial ProteinsDysenteryEscherichia coliEscherichia coli ProteinsHumansOpen Reading FramesPlasmidsShigella flexneriVirulence FactorsBacterial ProteinsEscherichia coli ProteinsVirulence Factors

Identifiers

PMID18293034
OpenAlexW2061650330

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.