Evidence map›Paper›PMID 18292093›Full record

ArticleThe Journal of biological chemistry2008

ATP-dependent chromatin remodeling by the Saccharomyces cerevisiae homologous recombination factor Rdh54.

YoungHo Kwon, Changhyun Seong, Peter Chi, Eric C Greene, Hannah Klein, Patrick Sung

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Rad54 and Rdh54 prevent Srs2-mediated disruption of Rad51 presynaptic filaments.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Regulation of DNA pairing in homologous recombination.Cold Spring Harbor perspectives in biology · 2014
    Review
  14. Mechanisms and principles of homology search during recombination.Nature reviews. Molecular cell biology · 2014
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Homologous recombination and its regulation.Nucleic acids research · 2012
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

YoungHo KwonDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Changhyun Seong
Peter Chi
Eric C Greene
Hannah Klein
Patrick Sung
Yale University · USColumbia University · USNew York University · US

Funding

YEAST DNA REPAIR GENES AND PROTEINS OF THE RAD52 GROUPR01ES007061 · NIEHS · YALE UNIVERSITY · PI Patrick Sung · 1995 to 2026
$9.4M
FORMATION AND RESOLUTION OF RECOMBINATION INTERMEDIATESR01GM057814 · NIGMS · YALE UNIVERSITY · PI SUNG, PATRICK · 1999 to 2016
$4.2M
Elucidating the Mechanisms of DNA RecombinationR01GM074739 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GREENE, ERIC C · 2006 to 2015
$2.7M
DNA HELICASES IN RECOMBINATION AND REPAIRR01GM053738 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KLEIN, HANNAH L. · 1997 to 2010
$2.4M
NIEHS NIH HHS ES07061NIGMS NIH HHS GM074739NIGMS NIH HHS GM53738NIGMS NIH HHS GM57814
6 · The paper itself

Abstract

Saccharomyces cerevisiae RDH54 is a key member of the evolutionarily conserved RAD52 epistasis group of genes needed for homologous recombination and DNA double strand break repair. The RDH54-encoded protein possesses a DNA translocase activity and functions together with the Rad51 recombinase in the D-loop reaction. By chromatin immunoprecipitation (ChIP), we show that Rdh54 is recruited, in a manner that is dependent on Rad51 and Rad52, to a site-specific DNA double strand break induced by the HO endonuclease. Because of its relatedness to Swi2/Snf2 chromatin remodelers, we have asked whether highly purified Rdh54 possesses chromatin-remodeling activity. Importantly, our results show that Rdh54 can mobilize a mononucleosome along DNA and render nucleosomal DNA accessible to a restriction enzyme, indicative of a chromatin-remodeling function. Moreover, Rdh54 co-operates with Rad51 in the utilization of naked or chromatinized DNA as template for D-loop formation. We also provide evidence for a strict dependence of the chromatin-remodeling attributes of Rdh54 on its ATPase activity and N-terminal domain. Interestingly, an N-terminal deletion mutant (rdh54Delta102) is unable to promote Rad51-mediated D-loop formation with a chromatinized template, while retaining substantial activity with naked DNA. These features of Rdh54 suggest a role of this protein factor in chromatin rearrangement during DNA recombination and repair.

Indexed as

Gene Expression Regulation, FungalAdenosine TriphosphatasesAdenosine TriphosphateChromatinDNADNA HelicasesDNA RepairDNA Repair EnzymesDNA TopoisomerasesGene DeletionModels, BiologicalMutationNucleosomesProtein Structure, TertiaryRad51 RecombinaseRecombination, GeneticAdenosine TriphosphatasesAdenosine TriphosphateChromatinDNADNA HelicasesDNA Repair EnzymesDNA TopoisomerasesNucleosomesRAD51 protein, S cerevisiaeRad51 RecombinaseRAD54 protein, S cerevisiaeRDH54 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID18292093
PMCPMC2447626
OpenAlexW2069962673

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.