Evidence map›Paper›PMID 18291415›Full record

ArticleJournal of molecular biology2008

Yeast cytosine deaminase mutants with increased thermostability impart sensitivity to 5-fluorocytosine.

Tiffany S Stolworthy, Aaron M Korkegian, Candice L Willmon, Andressa Ardiani, Jennifer Cundiff, Barry L Stoddard, Margaret E Black

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Prodrugs and prodrug-activated systems in gene therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
  7. Bi-Functional Radiotheranostics ofInternational journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Evaluation of a UCMK/dCK fusion enzyme for gemcitabine-mediated cytotoxicity.Biochemical and biophysical research communications · 2011
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tiffany S StolworthyDepartment of Pharmaceutical Sciences, Washington State University, Pullman, WA 99164-6534, USA.
Aaron M Korkegian
Candice L Willmon
Andressa Ardiani
Jennifer Cundiff
Barry L Stoddard
Margaret E Black
Washington State University · USFred Hutch Cancer Center · US

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Engineering enzymes for anti-tumor suicide gene therapyR01CA097328 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2003 to 2010
$2.5M
IMPROVING SUICIDE GENES FOR CANCER GENE THERAPYR01CA085939 · NCI · WASHINGTON STATE UNIVERSITY · PI BLACK, MARGARET E · 2000 to 2009
$2.3M
NCI NIH HHS CA85939NCI NIH HHS CA97328NCI NIH HHS R01 CA085939NCI NIH HHS R01 CA097328NIGMS NIH HHS T32 GM008268NIGMS NIH HHS T32-GM08268
6 · The paper itself

Abstract

Prodrug gene therapy (PGT) is a treatment strategy in which tumor cells are transfected with a 'suicide' gene that encodes a metabolic enzyme capable of converting a nontoxic prodrug into a potent cytotoxin. One of the most promising PGT enzymes is cytosine deaminase (CD), a microbial salvage enzyme that converts cytosine to uracil. CD also converts 5-fluorocytosine (5FC) to 5-fluorouracil, an inhibitor of DNA synthesis and RNA function. Over 150 studies of CD-mediated PGT applications have been reported since 2000, all using wild-type enzymes. However, various forms of CD are limited by inefficient turnover of 5FC and/or limited thermostability. In a previous study, we stabilized and extended the half-life of yeast CD (yCD) by repacking of its hydrophobic core at several positions distant from the active site. Here we report that random mutagenesis of residues selected based on alignment with similar enzymes, followed by selection for enhanced sensitization to 5FC, also produces an enzyme variant (yCD-D92E) with elevated T(m) values and increased activity half-life. The new mutation is located at the enzyme's dimer interface, indicating that independent mutational pathways can lead to an increase in stability, as well as a more subtle effect on enzyme kinetics. Each independently derived set of mutations significantly improves the enzyme's performance in PGT assays both in cell culture and in animal models.

Indexed as

AnimalsAntineoplastic AgentsCell Line, TumorCell SurvivalCrystallography, X-RayCytosine DeaminaseEnzyme StabilityEscherichia coliFemaleFlucytosineFluorouracilFungal ProteinsMiceMice, NudeModels, MolecularMutationAntineoplastic AgentsCytosine DeaminaseFlucytosineFluorouracilFungal ProteinsProdrugs

Identifiers

PMID18291415
PMCPMC2330253
OpenAlexW1980256942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.