Evidence map›Paper›PMID 18289560›Full record

ArticleJournal of theoretical biology2008

Diffusion-limited reactions in G-protein activation: unexpected consequences of antagonist and agonist competition.

Christopher J Brinkerhoff, Ji Sun Choi, Jennifer J Linderman

Open access · greenAbstract read
In one paragraph

Article in Journal of theoretical biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Christopher J BrinkerhoffDepartment of Chemical Engineering, University of Michigan, H.H. Dow Building, 2300 Hayward Street, Ann Arbor, MI 48109-2136, USA. brinkerh@umich.edu
Ji Sun Choi
Jennifer J Linderman
University of Michigan–Ann Arbor · US

Funding

Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Understanding G-Protein Coupled ReceptorsR01GM062930 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LINDERMAN, JENNIFER JEAN · 2001 to 2003
$497k
NIGMS NIH HHS R01 GM062930NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

In this work, we ask whether the simultaneous movement of agonist and antagonist among surface receptors (i.e. continually associating and dissociating from individual receptors according to specified kinetics) has any unexpected consequences for G-protein activation and receptor desensitization. A Monte Carlo model framework is used to track the diffusion and reaction of individual receptors, allowing the requirement for receptors and G-proteins or receptors and kinases to find each other by diffusion (collision coupling) to be implemented explicitly. We find that at constant agonist occupancy the effect of an antagonist on both G-protein activation and the ratio of G-protein activation to receptor desensitization can be modulated by varying the antagonist dissociation kinetics. The explanation for this effect is that antagonist dissociation kinetics influence the ability of agonists to access particular receptors and thus reach G-proteins and kinases near those receptors. Relevant parameter ranges for observation of these effects are identified. These results are useful for understanding experimental and therapeutic situations when both agonist and antagonist are present, and in addition may offer new insights into insurmountable antagonism.

Indexed as

Computer SimulationAnimalsCell MembraneDiffusionGTP-Binding ProteinsHumansModels, BiologicalMonte Carlo MethodPhosphorylationPhosphotransferasesProtein BindingReceptors, Cell SurfaceSignal TransductionGTP-Binding ProteinsPhosphotransferasesReceptors, Cell Surface

Identifiers

PMID18289560
PMCPMC2396454
OpenAlexW2031022486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.