Evidence map›Paper›PMID 18289052›Full record

ReviewCurrent pharmaceutical biotechnology2008

Mechanism and inhibition of LpxC: an essential zinc-dependent deacetylase of bacterial lipid A synthesis.

Adam W Barb, Pei Zhou

Abstract readReview
In one paragraph

Review in Current pharmaceutical biotechnology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 153 citations in OpenAlex.

  1. Review
  2. Review
  3. Biology of novel LpxC inhibitors forMicrobiology spectrum · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Chemical strategies for antisense antibiotics.Chemical Society reviews · 2024
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Microbial Genomics: Innovative Targets and Mechanisms.Antibiotics (Basel, Switzerland) · 2023
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. The Complex Structure of Protein AaLpxC fromMolecules (Basel, Switzerland) · 2021
    Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Adam W BarbDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina, 27710, USA.
Pei Zhou
Duke Medical Center · US

Funding

Structure and Mechanism of LpxC in Lipid A BiosynthesisR01AI055588 · NIAID · DUKE UNIVERSITY · PI ZHOU, PEI · 2003 to 2012
$3.0M
NIAID NIH HHS R01 AI055588
6 · The paper itself

Abstract

Multi-drug resistant (MDR), pathogenic Gram-negative bacteria pose a serious health threat, and novel antibiotic targets must be identified to combat MDR infections. One promising target is the zinc-dependent metalloamidase UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase (LpxC), which catalyzes the committed step of lipid A (endotoxin) biosynthesis. LpxC is an essential, single copy gene that is conserved in virtually all Gram-negative bacteria. LpxC structures, revealed by NMR and X-ray crystallography, demonstrate that LpxC adopts a novel 'beta-alpha-alpha-beta sandwich' fold and encapsulates the acyl chain of the substrate with a unique hydrophobic passage. Kinetic analysis revealed that LpxC functions by a general acid-base mechanism, with a glutamate serving as the general base. Many potent LpxC inhibitors have been identified, and most contain a hydroxamate group targeting the catalytic zinc ion. Although early LpxC-inhibitors were either narrow-spectrum antibiotics or broad-spectrum in vitro LpxC inhibitors with limited antibiotic properties, the recently discovered compound CHIR-090 is a powerful antibiotic that controls the growth of Escherichia coli and Pseudomonas aeruginosa, with an efficacy rivaling that of the FDA-approved antibiotic ciprofloxacin. CHIR-090 inhibits a wide range of LpxC enzymes with sub-nanomolar affinity in vitro, and is a two-step, slow, tight-binding inhibitor of Aquifex aeolicus and E. coli LpxC. The success of CHIR-090 suggests that potent LpxC-targeting antibiotics may be developed to control a broad range of Gram-negative bacteria.

Indexed as

AmidohydrolasesAnimalsEscherichia coli ProteinsHumansHydroxamic AcidsLipid AThreonineZincAmidohydrolasesCHIR 090Escherichia coli ProteinsHydroxamic AcidsLipid AThreonineUDP-3-O-acyl-N-acetylglucosamine deacetylaseZinc

Identifiers

PMID18289052
PMCPMC3022321
OpenAlexW2103572010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.