Evidence map›Paper›PMID 18287279›Full record

ArticleProtein science : a publication of the Protein Society2008

Engineering and characterization of a single chain surrogate light chain variable domain.

Lucia Morstadt, Andrew Bohm, Deniz Yüksel, Krishna Kumar, B David Stollar, James D Baleja

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lucia MorstadtDepartment of Biochemistry, Tufts University School of Medicine, Boston, Massachusetts 02111, USA.
Andrew Bohm
Deniz Yüksel
Krishna Kumar
B David Stollar
James D Baleja
Tufts University · US

Funding

Molecular Interactions in B cell DevelopmentR21AI064433 · NIAID · TUFTS UNIVERSITY BOSTON · PI BALEJA, JAMES D · 2006 to 2007
$242k
NIAID NIH HHS AI064433NIAID NIH HHS R21 AI064433
6 · The paper itself

Abstract

The surrogate light chain (SLC) is a key regulator of B cell development in the bone marrow, resulting in mature B cells that produce antibodies that are capable of interacting with antigens. The SLC comprises two noncovalently interacting proteins: VpreB and 14.1. We engineered a construct to represent the complete immunoglobulin-like domain of the SLC variable domain in a single protein chain that could be bacterially expressed. In this construct, the incomplete immunoglobulin domain of VpreB (residues 1-102) was linked to the J-segment of 14.1 (residues 40-53), which provided one beta-strand to complete the V-like domain (VpreBJ). Because VpreBJ has the interface to VH chains, but lacks the unique region of 14.1, which is important for SLC signaling, we predict that a properly folded VpreBJ would have the potential to act as a dominant negative mutant of the surrogate light chain. X-ray crystallography of VpreBJ at 2.0 A resolution showed that the engineering was successful. With its two beta-pleated sheets, packed face-to-face, the single chain VpreBJ resembles a mature light chain immunoglobulin V-domain (VL). The surface that would normally interact with the VH chain interacts with a crystallographically related VpreBJ molecule. The presence of dimeric species in solution was verified by analytical ultracentrifugation. VpreBJ is easily overexpressed in bacteria, while retaining the native conformation of an immunoglobulin domain, and thus may serve as an important reagent for future studies in B-cell development.

Indexed as

Amino Acid SequenceComplementarity Determining RegionsCrystallography, X-RayDimerizationEscherichia coliHumansImmunoglobulin Light Chains, SurrogateImmunoglobulin Variable RegionModels, MolecularMolecular Sequence DataProtein EngineeringProtein Structure, TertiarySequence AlignmentComplementarity Determining RegionsImmunoglobulin Light Chains, SurrogateImmunoglobulin Variable Region

Identifiers

PMID18287279
PMCPMC2248314
OpenAlexW2111726262

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.