Evidence map›Paper›PMID 18287075›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2008

Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.

Ki Seog Lee, Daniela Bumbaca, Jeffrey Kosman, Peter Setlow, Mark J Jedrzejas

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. The small acid-soluble proteins ofbioRxiv : the preprint server for biology · 2024
    Article
  9. Review
  10. Article
  11. Review
  12. The Effect of Decreased CaFoods (Basel, Switzerland) · 2023
    Article
  13. Molecular Link between DNA Damage Response and Microtubule Dynamics.International journal of molecular sciences · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. What's new and notable in bacterial spore killing!World journal of microbiology & biotechnology · 2021
    Review
  19. Structures of filamentous viruses infecting hyperthermophilic archaea explain DNA stabilization in extreme environments.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ki Seog LeeChildren's Hospital Oakland Research Institute, Oakland, CA 94609, USA.
Daniela Bumbaca
Jeffrey Kosman
Peter Setlow
Mark J Jedrzejas
UConn Health · US

Funding

DEGRADATION REACTIONS IN SPORE GERMINATIONR01GM019698 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI SETLOW, PETER · 1985 to 2007
$1.9M
DEGRADATION REACTIONS IN SPORE GERMINATIONR37GM019698 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI SETLOW, PETER · 1994 to 2003
$1.7M
NIGMS NIH HHS GM19698NIGMS NIH HHS R01 GM019698NIGMS NIH HHS R37 GM019698
6 · The paper itself

Abstract

The DNA-binding alpha/beta-type small acid-soluble proteins (SASPs) are a major factor in the resistance and long-term survival of spores of Bacillus species by protecting spore DNA against damage due to desiccation, heat, toxic chemicals, enzymes, and UV radiation. We now report the crystal structure at 2.1 A resolution of an alpha/beta-type SASP bound to a 10-bp DNA duplex. In the complex, the alpha/beta-type SASP adopt a helix-turn-helix motif, interact with DNA through minor groove contacts, bind to approximately 6 bp of DNA as a dimer, and the DNA is in an A-B type conformation. The structure of the complex provides important insights into the molecular details of both DNA and alpha/beta-type SASP protection in the complex and thus also in spores.

Indexed as

DNA DamageModels, MolecularBacillusBacterial ProteinsCrystallizationDNA, BacterialDNA-Binding ProteinsNucleic Acid ConformationProtein ConformationSpores, BacterialBacterial ProteinsDNA, BacterialDNA-Binding Proteinsspore-specific proteins, Bacillus

Identifiers

PMID18287075
PMCPMC2268541
OpenAlexW1979807826

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.