Evidence map›Paper›PMID 18285836›Full record

ArticleEuropean journal of human genetics : EJHG2008

Pathogenicity of the BRCA1 missense variant M1775K is determined by the disruption of the BRCT phosphopeptide-binding pocket: a multi-modal approach.

Marc Tischkowitz, Nancy Hamel, Marcelo A Carvalho, Gabriel Birrane, Aditi Soni, Erik H van Beers, Simon A Joosse, Nora Wong, David Novak, Louise A Quenneville and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
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  3. LAHMA: structure analysis through local annotation of homology-matched amino acids.Acta crystallographica. Section D, Structural biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 5 countries.

Marc TischkowitzDepartment of Oncology, McGill University, Montréal, Quebec, Canada.
Nancy Hamel
Marcelo A Carvalho
Gabriel Birrane
Aditi Soni
Erik H van Beers
Simon A Joosse
Nora Wong
David Novak
Louise A Quenneville
Scott A Grist
kConFab
Petra M Nederlof
David E Goldgar
Sean V Tavtigian
Alvaro N Monteiro
John A A Ladias
William D Foulkes
Harvard University · USMcGill University Health Centre · CAFlinders University · AUJewish General Hospital · CAUniversity of Utah · USMoffitt Cancer Center · USThe Netherlands Cancer Institute · NL

Funding

BRCA2 missense mutations and breast cancerR01CA116167 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2007 to 2011
$3.0M
BRCA1 and BRCA2 missense mutations and breast cancer riskU01CA116167 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2013 to 2017
$2.7M
Gene Regulation Mechanisms by the APP/Fe65/TIP60 ComplexR01AG021964 · NIA · BETH ISRAEL DEACONESS MEDICAL CENTER · PI LADIAS, JOHN A.A. · 2003 to 2007
$1.5M
FUNCTIONAL ANALYSIS OF BRCA1 MUTANTSR01CA092309 · NCI · STRANG CANCER PREVENTION CENTER · PI MONTEIRO, ALVARO N · 2002 to 2006
$1.3M
Molecular Mechanisms of CFTR RegulationR01DK062162 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI LADIAS, JOHN A.A. · 2003 to 2006
$1.0M
NCI NIH HHS CA116167NCI NIH HHS CA92309NCI NIH HHS R01 CA092309NCI NIH HHS R01 CA116167NCI NIH HHS U01 CA116167NIA NIH HHS AG021964NIA NIH HHS R01 AG021964NIDDK NIH HHS DK62162NIDDK NIH HHS R01 DK062162
6 · The paper itself

Abstract

A number of germ-line mutations in the BRCA1 gene confer susceptibility to breast and ovarian cancer. However, it remains difficult to determine whether many single amino-acid (missense) changes in the BRCA1 protein that are frequently detected in the clinical setting are pathologic or not. Here, we used a combination of functional, crystallographic, biophysical, molecular and evolutionary techniques, and classical genetic segregation analysis to demonstrate that the BRCA1 missense variant M1775K is pathogenic. Functional assays in yeast and mammalian cells showed that the BRCA1 BRCT domains carrying the amino-acid change M1775K displayed markedly reduced transcriptional activity, indicating that this variant represents a deleterious mutation. Importantly, the M1775K mutation disrupted the phosphopeptide-binding pocket of the BRCA1 BRCT domains, thereby inhibiting the BRCA1 interaction with the proteins BRIP1 and CtIP, which are involved in DNA damage-induced checkpoint control. These results indicate that the integrity of the BRCT phosphopeptide-binding pocket is critical for the tumor suppression function of BRCA1. Moreover, this study demonstrates that multiple lines of evidence obtained from a combination of functional, structural, molecular and evolutionary techniques, and classical genetic segregation analysis are required to confirm the pathogenicity of rare variants of disease-susceptibility genes and obtain important insights into the underlying pathogenetic mechanisms.

Indexed as

Amino Acid SubstitutionAdultBRCA1 ProteinBreast NeoplasmsCarrier ProteinsChromosome SegregationConserved SequenceDNA-Binding ProteinsEndodeoxyribonucleasesEvolution, MolecularFanconi Anemia Complementation Group ProteinsFemaleHumansLikelihood FunctionsLysineMaleBRCA1 ProteinBRIP1 protein, humanCarrier ProteinsDNA-Binding ProteinsEndodeoxyribonucleasesFanconi Anemia Complementation Group ProteinsLysineMethionineNuclear ProteinsPhosphopeptidesRBBP8 protein, humanRNA Helicases

Identifiers

PMID18285836
PMCPMC3905962
OpenAlexW2104867201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.