Evidence map›Paper›PMID 18285464›Full record

ArticleMolecular and cellular biology2008

Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo.

Kavitha Sarma, Raphael Margueron, Alexey Ivanov, Vincenzo Pirrotta, Danny Reinberg

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 278 citations in OpenAlex.

  1. Review
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  5. Epigenetics · 2023
    Review
  6. Article
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  8. Critical Roles of Polycomb Repressive Complexes in Transcription and Cancer.International journal of molecular sciences · 2022
    Review
  9. Epigenomes · 2022
    Review
  10. Article
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  12. Review
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87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kavitha SarmaHoward Hughes Medical Institute, NYU School of Medicine-Smilow Research Center, Biochemistry Department, 522 First Avenue, 2nd Floor, Room 211, New York, NY 10016, USA.
Raphael Margueron
Alexey Ivanov
Vincenzo Pirrotta
Danny Reinberg
New York University · USRutgers, The State University of New Jersey · USThe Wistar Institute · US

Funding

Transcription Regulation by NC2R01GM064844 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI REINBERG, DANNY · 2002 to 2014
$3.3M
Howard Hughes Medical InstituteNIGMS NIH HHS GM64844NIGMS NIH HHS R01 GM064844
6 · The paper itself

Abstract

The mammalian Polycomblike protein PHF1 was previously shown to interact with the Polycomb group (PcG) protein Ezh2, a histone methyltransferase whose activity is pivotal in sustaining gene repression during development and in adulthood. As Ezh2 is active only when part of the Polycomb Repressive Complexes (PRC2-PRC4), we examined the functional role of its interaction with PHF1. Chromatin immunoprecipitation experiments revealed that PHF1 resides along with Ezh2 at Ezh2-regulated genes such as the HoxA loci and the non-Hox MYT1 and WNT1 genes. Knockdown of PHF1 or of Ezh2 led to up-regulated HoxA gene expression. Interestingly, depletion of PHF1 did correlate with reduced occupancy of Bmi-1, a PRC1 component. As expected, knockdown of Ezh2 led to reduced levels of its catalytic products H3K27me2/H3K27me3. However, reduced levels of PHF1 also led to decreased global levels of H3K27me3. Notably, the levels of H3K27me3 decreased while those of H3K27me2 increased at the up-regulated HoxA loci tested. Consistent with this, the addition of PHF1 specifically stimulated the ability of Ezh2 to catalyze H3K27me3 but not H3K27me1/H3K27me2 in vitro. We conclude that PHF1 modulates the activity of Ezh2 in favor of the repressive H3K27me3 mark. Thus, we propose that PHF1 is a determinant in PcG-mediated gene repression.

Indexed as

CatalysisCell LineCell ProliferationCell ShapeDNA-Binding ProteinsEnhancer of Zeste Homolog 2 ProteinHomeodomain ProteinsHumansLysineMethylationPolycomb-Group ProteinsPolycomb Repressive Complex 2Promoter Regions, GeneticProtein BindingRepressor ProteinsRNA, Small InterferingDNA-Binding ProteinsEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanHomeodomain ProteinsLysinePHF1 protein, humanPolycomb-Group ProteinsPolycomb Repressive Complex 2Repressor ProteinsRNA, Small InterferingTranscription Factors

Identifiers

PMID18285464
PMCPMC2293112
OpenAlexW2150135551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.