Evidence map›Paper›PMID 18281060›Full record

ArticleJournal of molecular biology2008

Structural characterization of the Yersinia pestis type III secretion system needle protein YscF in complex with its heterodimeric chaperone YscE/YscG.

Ping Sun, Joseph E Tropea, Brian P Austin, Scott Cherry, David S Waugh

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 76 citations in OpenAlex.

  1. Review
  2. Article
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  4. FEMS microbes · 2025
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ping SunMacromolecular Crystallography Laboratory, Center for Cancer Research, National Cancer Institute at Frederick, P.O. Box B, Frederick, MD, USA.
Joseph E Tropea
Brian P Austin
Scott Cherry
David S Waugh
Frederick National Laboratory for Cancer Research · USCenter for Cancer Research · USNational Cancer Institute · US

Funding

Protein Purification CoreZICBC011016 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TROPEA, JOSEPH · 2009 to 2021
$11.0M
Interstate Variation in Healthcare Utilization Among Children with ASDR01MH077000 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI MANDELL, DAVID S · 2007 to 2011
$2.8M
Structural Proteomics of the Yersinia Yop VirulonZIABC010342 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WAUGH, DAVID S · 2009 to 2013
$1.5M
Structural Proteomics of the Yersinia Yop VirulonZ01BC010342 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WAUGH, DAVID S · 2000 to 2008
$1.0M
Intramural NIH HHS Z01 BC010342NIMH NIH HHS R01 MH077000
6 · The paper itself

Abstract

The plague-causing bacterium Yersinia pestis utilizes a type III secretion system to deliver effector proteins into mammalian cells where they interfere with signal transduction pathways that mediate phagocytosis and the inflammatory response. Effector proteins are injected through a hollow needle structure composed of the protein YscF. YscG and YscE act as "chaperones" to prevent premature polymerization of YscF in the cytosol of the bacterium prior to assembly of the needle. Here, we report the crystal structure of the YscEFG protein complex at 1.8 A resolution. Overall, the structure is similar to that of the analogous PscEFG complex from the Pseudomonas aeruginosa type III secretion system, but there are noteworthy differences. The structure confirms that, like PscG, YscG is a member of the tetratricopeptide repeat family of proteins. YscG binds tightly to the C-terminal half of YscF, implying that it is this region of YscF that controls its polymerization into the needle structure. YscE interacts with the N-terminal tetratricopeptide repeat motif of YscG but makes very little direct contact with YscF. Its function may be to stabilize the structure of YscG and/or to participate in recruiting the complex to the secretion apparatus. No electron density could be observed for the 49 N-terminal residues of YscF. This and additional evidence suggest that the N-terminus of YscF is disordered in the complex with YscE and YscG. As expected, conserved residues in the C-terminal half of YscF mediate important intra- and intermolecular interactions in the complex. Moreover, the phenotypes of some previously characterized mutations in the C-terminal half of YscF can be rationalized in terms of the structure of the heterotrimeric YscEFG complex.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBacterial ProteinsCrystallography, X-RayMembrane ProteinsMembrane Transport ProteinsModels, MolecularMolecular ChaperonesMolecular Sequence DataProtein BindingProtein ConformationYersinia pestisBacterial Outer Membrane ProteinsBacterial ProteinsMembrane ProteinsMembrane Transport ProteinsMolecular ChaperonesYscC protein, Yersinia pestisYscF protein, Yersinia pestisYscG protein, Yersinia

Identifiers

PMID18281060
PMCPMC2329918
OpenAlexW2141821029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.