Evidence map›Paper›PMID 18281034›Full record

ArticleExperimental and molecular pathology2008

Epigenetic mechanisms regulate Mallory Denk body formation in the livers of drug-primed mice.

Fawzia Bardag-Gorce, Joan Oliva, Jessica Villegas, Sara Fraley, Fataneh Amidi, Jun Li, Jennifer Dedes, Barbara French, Samuel W French

Open access · greenAbstract read
In one paragraph

Article in Experimental and molecular pathology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Mallory-Denk body pathogenesis revisited.World journal of hepatology · 2010
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Molecular events in hepatic preneoplasia: a review.Experimental and molecular pathology · 2010
    Review
  16. Article
  17. Review
  18. Article
  19. Impaired methylation as a novel mechanism for proteasome suppression in liver cells.Biochemical and biophysical research communications · 2010
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Fawzia Bardag-GorceDepartment of Pathology, Harbor-UCLA Medical Center, 1000 W. Carson St., Torrance, CA 90509, USA.
Joan Oliva
Jessica Villegas
Sara Fraley
Fataneh Amidi
Jun Li
Jennifer Dedes
Barbara French
Samuel W French
UCLA Medical Center · USHarbor–UCLA Medical Center · US

Funding

The Southernearch Center for ALPD and CirrhosisP50AA011999 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ANNA S. GUKOVSKAYA · 1999 to 2026
$45.8M
PATHOGENESIS OF EXPERIMENTAL ALCOHOLIC LIVER DISEASER01AA008116 · NIAAA · UNIVERSITY OF OTTAWA · PI FRENCH, SAMUEL WILLIAM · 1990 to 2010
$2.9M
NIAAA NIH HHS P50 AA011999NIAAA NIH HHS R01 AA008116PHS HHS 8116PHS HHS P50-011999
6 · The paper itself

Abstract

The mechanism of Mallory Denk body formation is still not fully understood, but growing evidence implicates epigenetic mechanisms in MDB formation. In a previous study the epigenetic memory of MDB formation remained intact for at least 4 months after withdrawal from the DDC diet. In the present study, mice were fed a diet containing DDC or a diet containing DDC and S-adenosylmethionine (SAMe) to investigate the epigenetic memory of MDB formation. DDC feeding caused an increase in histone 3 acetylation, a decrease in histone 3 trimethylation, and an increase in histone ubiquitinylation. The addition of SAMe to the DDC diet prevented the DDC induced decrease of H3K4 and H3K9 trimethylation and the increase in histone ubiquitinylation. Changes in histone modifying enzymes (HATs and HDACs), were also found in the liver nuclear extracts of the DDC/SAMe fed mice. Data mining of microarray analysis confirmed that gene expression changed with DDC refeeding, particularly the SAMe metabolizing enzymes, Mat2a, AMD, AHCY and Mthfr. SAMe supplementation prevented the decrease of AHCY and GNMT, and prevented the increase in Mthfr, which provides a mechanism to explain how DDC inhibits methylation of histones. The results indicate that SAMe prevented the epigenetic cellular memory involved in the MDB formation.

Indexed as

Epigenesis, GeneticAcetylationAnimalsCarcinogensCell FractionationCell NucleusDisease Models, AnimalDrug AntagonismDrug CombinationsGene Expression Regulation, NeoplasticHepatocytesHistonesLiverMaleMethylationMiceCarcinogensDrug CombinationsHistonesMallory body protein, mouseProteinsRNA, MessengerS-Adenosylmethionine

Identifiers

PMID18281034
PMCPMC2874464
OpenAlexW2059094207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.