Evidence map›Paper›PMID 18275278›Full record

ArticleThe Journal of infectious diseases2008

Molecular and bioinformatic evidence of hepatitis C virus evolution in brain.

Sarah L Fishman, Jacinta M Murray, Francis J Eng, José L Walewski, Susan Morgello, Andrea D Branch

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 90 citations in OpenAlex.

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  11. Brain magnetic resonance spectroscopy and cognitive impairment in chronic hepatitis C patients.The Egyptian journal of neurology, psychiatry and neurosurgery · 2018
    Article
  12. Review
  13. Article
  14. Review
  15. Deep sequencing of hepatitis C virus reveals genetic compartmentalization in cerebrospinal fluid from cognitively impaired patients.Liver international : official journal of the International Association for the Study of the Liver · 2016
    Article
  16. Hepatitis C virus and neurological damage.World journal of hepatology · 2016
    Review
  17. Article
  18. Diminished viral replication and compartmentalization of hepatitis C virus in hepatocellular carcinoma tissue.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Sarah L FishmanDepartment of Medicine, Mount Sinai School of Medicine, New York, New York, USA.
Jacinta M Murray
Francis J Eng
José L Walewski
Susan Morgello
Andrea D Branch
New York University · USIcahn School of Medicine at Mount Sinai · US

Funding

ZIPRASIDONE (GEODON) AUGMENTATION IN SEROTONIN REUPTAKE INHIBITOR-RESISTANT OBM01RR000071 · NCRR · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI NEWCORN, JEFFREY H · 1985 to 2009
$41.5M
The Manahattan HIV Brain BankR24MH059724 · NIMH · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI MORGELLO, SUSAN · 1998 to 2007
$15.4M
The Manhattan HIV Brain BankU24MH100931 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MORGELLO, SUSAN · 2013 to 2023
$14.0M
The Manhattan HIV Brain BankU01MH083501 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MORGELLO, SUSAN · 2008 to 2012
$8.9M
National NeuroAIDS Tissue Consortium Statistics and Data Coordinating CenterU01MH083545 · NIMH · INDIANA UNIVERSITY INDIANAPOLIS · PI YIANNOUTSOS, CONSTANTIN THEODORE · 2008 to 2012
$3.3M
Modulation of HCV Gene ExpressionR01DK066939 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BRANCH, ANDREA D. · 2004 to 2010
$2.0M
HCV Alternate Reading Frame Protein in HIV/HCV Co-infectR01DA016156 · NIDA · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BRANCH, ANDREA D. · 2003 to 2007
$1.9M
NCRR NIH HHS M01 RR000071NCRR NIH HHS M01-RR-00071NIDA NIH HHS DA016156NIDA NIH HHS R01 DA016156NIDDK NIH HHS DK066939NIDDK NIH HHS R01 DK066939NIMH NIH HHS R24 MH059724NIMH NIH HHS R24MH59724NIMH NIH HHS U01 MH083501NIMH NIH HHS U01 MH083545NIMH NIH HHS U24 MH100931
6 · The paper itself

Abstract

backgroundNeurocognitive deficits in patients with hepatitis C virus (HCV) infection prompted a search for HCV in brain.

resultsHCV was present in the brains of 7 (54%) of 13 patients with viremia, as determined by 5' UTR and E1 (envelope 1) gene analysis. Brain HCV RNA consensus sequences differed from those in plasma and liver in 4 (57%) of 7 patients. The quality of HCV RNA from postmortem brain and liver was assessed and demonstrated to be suitable for sequence analysis. Quasispecies analysis revealed that several mutations present in clones from >1 brain region were absent in clones from liver and plasma. Brain-specific mutations defined several families of related sequences. The patterns of brain-specific mutations in these families were consistent with the evolution of HCV RNA from a common ancestor. Single-nucleotide-polymorphism analysis confirmed that a prominent brain-specific mutation constituted approximately 10% of HCV RNA in cerebellum and medulla but that this mutation was undetectable in the liver and plasma of the same patient.

conclusionsThis study introduces novel methods for assessing RNA from postmortem samples. It increases the reported cases of HCV in the brain, provides the first E1 sequences from the brain, and contributes to the growing evidence that HCV replicates and evolves within the brain.

Indexed as

Evolution, MolecularAmino Acid SequenceAutopsyBrainCohort StudiesDNA Mutational AnalysisFemaleGenotypeHepacivirusHepatitis C, ChronicHumansLiverMaleMolecular Sequence DataMutationPhylogenyRNA, RibosomalRNA, Viral

Identifiers

PMID18275278
PMCPMC2736634
OpenAlexW2166003454

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.