Evidence map›Paper›PMID 18275178›Full record

ArticleThe journal of physical chemistry. B2008

How hydrophobic buckminsterfullerene affects surrounding water structure.

Dahlia R Weiss, Tanya M Raschke, Michael Levitt

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Water structuring above solutes with planar hydrophobic surfaces.Physical chemistry chemical physics : PCCP · 2017
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Remarkable patterns of surface water ordering around polarized buckminsterfullerene.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  12. Review
  13. Article
  14. Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Dahlia R WeissDepartment of Structural Biology, Stanford Medical School, Stanford, CA 94305, USA. dweiss@stanford.edu
Tanya M Raschke
Michael Levitt
Stanford Medicine · US

Funding

Physics-based Simulation of Biological Structures(RMI)U54GM072970 · NIGMS · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO · 2004 to 2013
$33.5M
Simulation and Prediction of Protein FoldingR37GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2002 to 2012
$2.8M
SIMULATION OF PROTEIN UNFOLDING AND FOLDINGR01GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 1989 to 2001
$361k
NIGMS NIH HHS GM 41455NIGMS NIH HHS R01 GM041455NIGMS NIH HHS R37 GM041455NIGMS NIH HHS U54 GM 072970NIGMS NIH HHS U54 GM072970
6 · The paper itself

Abstract

The hydrophobic hydration of fullerenes in water is of significant interest as the most common Buckminsterfullerene (C60) is a mesoscale sphere; C60 also has potential in pharmaceutical and nanomaterial applications. We use an all-atom molecular dynamics simulation lasting hundreds of nanoseconds to determine the behavior of a single molecule of C60 in a periodic box of water, and compare this to methane. A C60 molecule does not induce drying at the surface; however, unlike a hard sphere methane, a hard sphere C60 solute does. This is due to a larger number of attractive Lennard-Jones interactions between the carbon atom centers in C60 and the surrounding waters. In these simulations, water is not uniformly arranged but rather adopts a range of orientations in the first hydration shell despite the spherical symmetry of both solutes. There is a clear effect of solute size on the orientation of the first hydration shell waters. There is a large increase in hydrogen-bonding contacts between waters in the C60 first hydration shell. There is also a disruption of hydrogen bonds between waters in the first and second hydration shells. Water molecules in the first hydration shell preferentially create triangular structures that minimize the net water dipole near the surface near both the methane and C60 surface, reducing the total energy of the system. Additionally, in the first and second hydration shells, the water dipoles are ordered to a distance of 8 A from the solute surface. We conclude that, with a diameter of approximately 1 nm, C60 behaves as a large hydrophobic solute.

Indexed as

Hydrophobic and Hydrophilic InteractionsAdsorptionFullerenesSolubilitySurface TensionWaterFullerenesWater

Identifiers

PMID18275178
PMCPMC2692030
OpenAlexW1969191546

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.