Evidence map›Paper›PMID 18273062›Full record

ArticleThe EMBO journal2008

A novel switch region regulates H-ras membrane orientation and signal output.

Daniel Abankwa, Michael Hanzal-Bayer, Nicolas Ariotti, Sarah J Plowman, Alemayehu A Gorfe, Robert G Parton, J Andrew McCammon, John F Hancock

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 203 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Development of a Genetically Encoded and Potent PDE6D Inhibitor.Chembiochem : a European journal of chemical biology · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. RAS GTPases and Interleaflet Coupling in the Plasma Membrane.Cold Spring Harbor perspectives in biology · 2023
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Structural insights into Ras regulation by SIN1.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Article

61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Daniel AbankwaMolecular Cell Biology, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia. d.abankwa@imb.uq.edu.au
Michael Hanzal-Bayer
Nicolas Ariotti
Sarah J Plowman
Alemayehu A Gorfe
Robert G Parton
J Andrew McCammon
John F Hancock
University of Queensland · AUCenter for Theoretical Biological Physics · USHoward Hughes Medical Institute · US

Funding

Structure and Function of Plasma membrane NanodomainsR01GM066717 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HANCOCK, JOHN F · 2003 to 2012
$2.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM066717
6 · The paper itself

Abstract

The plasma membrane nanoscale distribution of H-ras is regulated by guanine nucleotide binding. To explore the structural basis of H-ras membrane organization, we combined molecular dynamic simulations and medium-throughput FRET measurements on live cells. We extracted a set of FRET values, termed a FRET vector, to describe the lateral segregation and orientation of H-ras with respect to a large set of nanodomain markers. We show that mutation of basic residues in helix alpha4 or the hypervariable region (HVR) selectively alter the FRET vectors of GTP- or GDP-loaded H-ras, demonstrating a critical role for these residues in stabilizing GTP- or GDP-H-ras interactions with the plasma membrane. By a similar analysis, we find that the beta2-beta3 loop and helix alpha5 are involved in a novel conformational switch that operates through helix alpha4 and the HVR to reorient the H-ras G-domain with respect to the plasma membrane. Perturbation of these switch elements enhances MAPK activation by stabilizing GTP-H-ras in a more productive signalling conformation. The results illustrate how the plasma membrane spatially constrains signalling conformations by acting as a semi-neutral interaction partner.

Indexed as

AnimalsCell LineCell MembraneCloning, MolecularCricetinaeFlow CytometryFluorescence Resonance Energy TransferGuanosine DiphosphateGuanosine TriphosphateHumansModels, MolecularMutagenesis, Site-DirectedPoint MutationProtein Structure, TertiaryProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)Guanosine DiphosphateGuanosine TriphosphateProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)

Identifiers

PMID18273062
PMCPMC2265749
OpenAlexW2105779105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.