Evidence map›Paper›PMID 18268012›Full record

ArticleMolecular and cellular biology2008

Snu56p is required for Mer1p-activated meiotic splicing.

Richard J Balzer, Michael F Henry

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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  11. Cancer-associated regulation of alternative splicing.Nature structural & molecular biology · 2009
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Richard J BalzerDepartment of Molecular Biology, UMNDJ-SOM, 2 Medical Center Drive, Stratford, NJ 08084, USA. henrymf@umdnj.edu
Michael F Henry
Rutgers, The State University of New Jersey · US

Funding

PROTEIN ARGININE METHYLATION AND RNA MATURATIONR01GM058493 · NIGMS · UNIV OF MED/DENT NJ-SCH OSTEOPATHIC MED · PI HENRY, MICHAEL F · 1999 to 2003
$919k
NIGMS NIH HHS GM58493NIGMS NIH HHS R01 GM058493
6 · The paper itself

Abstract

Alternative or regulated splicing can be applied to genes that are transcribed but whose products may be deleterious or unnecessary to the cell. In the yeast Saccharomyces cerevisiae, positive splicing regulation occurs during meiosis in which diploid cells divide to form haploid gametes. The Mer1 protein recruits the U1 snRNP to specific pre-mRNAs, permitting spliceosomal assembly and splicing. The mature transcripts are required for meiotic progression and, subsequently, sporulation. We have identified a novel allele (snu56-2) of the essential U1 snRNP protein Snu56p that exhibits a sporulation defect. Using a CUP1 reporter assay and reverse transcriptase PCR, we demonstrate that this allele specifically impairs Mer1p-activated splicing. This is not a reflection of a generally deficient spliceosome, as these cells splice vegetative transcripts efficiently. Furthermore, Snu56p depletion in vivo does not significantly impact mitotic splicing. Thus, its splicing function appears to be limited to Mer1p-activated meiosis-specific splicing. Two-hybrid studies indicate that Snu56p interacts with the other two U1 snRNP factors (Mer1p and Nam8p) required for this process. Interestingly, these two proteins do not interact, suggesting that Snu56p links pre-mRNA-bound Mer1p to Nam8p in the U1 snRNP. This work demonstrates that the Snu56 protein is required for splicing only during meiosis.

Indexed as

AllelesDiploidyGene DeletionGene Expression Regulation, FungalHomozygoteMeiosisProtein-Arginine N-MethyltransferasesProtein BindingRepressor ProteinsRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRNA SplicingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSensitivity and SpecificityTwo-Hybrid System TechniquesHMT1 protein, S cerevisiaeMER1 protein, S cerevisiaeProtein-Arginine N-MethyltransferasesRepressor ProteinsRibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSnu56 protein, S cerevisiae

Identifiers

PMID18268012
PMCPMC2293118
OpenAlexW2135801043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.