Evidence map›Paper›PMID 18263742›Full record

ArticleApplied and environmental microbiology2008

Markerless multiple-gene-deletion system for Streptococcus mutans.

Anirban Banerjee, Indranil Biswas

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Induction ofMicrobiology (Reading, England) · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Degradation of SsrA-tagged proteins in streptococci.Microbiology (Reading, England) · 2015
    Article
  12. Article
  13. Article
  14. Streptococcus mutans: a new Gram-positive paradigm?Microbiology (Reading, England) · 2013
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Anirban BanerjeeDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, 3025 Wahl Hall West-MS 3029, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA.
Indranil Biswas
University of South Dakota · US

Funding

Mechanisms of Virulence Gene Regulation in Streptococcus mutansR01DE016686 · NIDCR · UNIVERSITY OF SOUTH DAKOTA · PI BISWAS, INDRANIL · 2007 to 2011
$1.2M
Expression of Cell Surface Proteins in Streptococcus mutansR21DE016056 · NIDCR · UNIVERSITY OF SOUTH DAKOTA · PI BISWAS, INDRANIL · 2006 to 2007
$367k
NIDCR NIH HHS DE016056NIDCR NIH HHS DE016686NIDCR NIH HHS R01 DE016686NIDCR NIH HHS R21 DE016056
6 · The paper itself

Abstract

Inactivation or selective modification is essential to elucidate the putative function of a gene. The present study describes an improved Cre-loxP-based method for markerless multiple gene deletion in Streptococcus mutans, the principal etiological agent of dental caries. This modified method uses two mutant loxP sites, which after recombination creates a double-mutant loxP site that is poorly recognized by Cre recombinase, facilitating multiple gene deletions in a single genetic background. The effectiveness of this modified strategy was demonstrated by the construction of both single and double gene deletions at the htrA and clpP loci on the chromosome of Streptococcus mutans. HtrA and ClpP play key roles in the processing and maturation of several important proteins, including many virulence factors. Deletion of these genes resulted in reducing the organism's ability to withstand exposure to low pH and oxidative agents. The method described here is simple and efficient and can be easily implemented for multiple gene deletions with S. mutans and other streptococci.

Indexed as

Gene DeletionAttachment Sites, MicrobiologicalGene Expression Regulation, BacterialGenes, BacterialGenetic MarkersGenome, BacterialIntegrasesStreptococcus mutansCre recombinaseGenetic MarkersIntegrases

Identifiers

PMID18263742
PMCPMC2292598
OpenAlexW2151245224

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.